071001-植物学
071023-计算生物学

植物系统生物学

   

2017-07~现在, 中科院上海植生所, 研究员
2008-08~现在, 中国科学院上海生命科学研究院计算生物学研究所, 研究员
2006-03~2008-07,美国伊利诺伊大学, 研究助理教授
2004-08~2006-02,美国伊利诺伊大学, 博士后

2012-01-01-今,Frontiers in Plant Systems Biology, Editorial board
2010-01-01-今,Plant Cell & Environment, Editorial board
2010-01-01-今,Frontiers in Plant Physiology, Editorial board
2009-01-01-今,Global Change Biology- Bioenergy, Editorial board

   

（1） 2013年度中国科学院青年科学家国际合作奖, 国家级, 2013
（2） Melvin Calvin-Andrew Benson Award 2013, 其他, 2013
（3） SA-SIBS 2011 Young Faculty Award Present, 省级, 2011
（4） 上海市浦江人才人才计划, 省级, 2010

（ 1 ） 提高产氢提高提高光合藻类光合产氢效率的方法, 发明, 2012, 第 2 作者, 专利号: 2011101202613
（ 2 ） 一种冠层光合蒸腾测量仪, 实用新型, 2014, 第 3 作者, 专利号: 201320891829.6
（ 3 ） 一种垂直开启式自动冠层同化箱, 实用新型, 2015, 第 2 作者, 专利号: 201520133143.X
（ 4 ） 一种植物表型扫描装置, 实用新型, 2015, 第 4 作者, 专利号: 201520299589.X

   

[1] Chen, Faming, Zheng, Guangyong, Qu, Mingnan, Wang, Yanjie, Lyu, MingJu Amy, Zhu, XinGuang. Knocking out NEGATIVE REGULATOR OF PHOTOSYNTHESIS 1 increases rice leaf photosynthesis and biomass production in the field. JOURNAL OF EXPERIMENTAL BOTANY[J]. 2021, 72(5): 1836-1849, https://www.webofscience.com/wos/woscc/full-record/WOS:000637289800028.
[2] Zhu, XinGuang, Zhu, JianKang. Precision genome editing heralds rapid de novo domestication for new crops. CELL. 2021, 184(5): 1133-1134, http://dx.doi.org/10.1016/j.cell.2021.02.004.
[3] Zhao, HongLong, Chang, TianGen, Xiao, Yi, Zhu, XinGuang. Potential metabolic mechanisms for inhibited chloroplast nitrogen assimilation under high CO2. PLANT PHYSIOLOGY[J]. 2021, 187(3): 1812-1833, http://dx.doi.org/10.1093/plphys/kiab345.
[4] 朱新广. The coordination of major events in C4 photosynthesis evolution in the genus Flaveria. Scientific Report[J]. 2021, [5] Liu, Fusang, Song, Qingfeng, Zhao, Jinke, Mao, Linxiong, Bu, Hongyi, Hu, Yong, Zhu, XinGuang. Canopy occupation volume as an indicator of canopy photosynthetic capacity. NEW PHYTOLOGIST[J]. 2021, 232(2): 941-956, http://dx.doi.org/10.1111/nph.17611.
[6] Honglong Zhao, Yu Wang, Ming-Ju Amy Lyu, 朱新广. Two major metabolic factors for an efficient NADP-malic enzyme type C4 photosynthesis. Plant Physiology[J]. 2021, [7] Essemine, Jemaa, Qu, Mingnan, Lyu, MingJu Amy, Song, Qingfeng, Khan, Naveed, Chen, Genyun, Wang, Peng, Zhu, XinGuang. Photosynthetic and transcriptomic responses of two C-4 grass species with different NaCl tolerance. JOURNAL OF PLANT PHYSIOLOGY[J]. 2020, 253: http://dx.doi.org/10.1016/j.jplph.2020.153244.
[8] Perveen, Shahnaz, Qu, Mingnan, Chen, Faming, Essemine, Jemaa, Khan, Naveed, Lyu, MingJu Amy, Chang, Tiangen, Song, Qingfeng, Chen, GenYun, Zhu, XinGuang. Overexpression of maize transcription factor mEmBP-1 increases photosynthesis, biomass, and yield in rice. JOURNAL OF EXPERIMENTAL BOTANY[J]. 2020, 71(16): 4944-4957, https://www.webofscience.com/wos/woscc/full-record/WOS:000573250000026.
[9] 许大全, 朱新广. 创造“玉米稻”：禾谷作物高产优质的一个新战略. 植物生理学报[J]. 2020, 1313-1320, http://lib.cqvip.com/Qikan/Article/Detail?id=7102817458.
[10] Essemine, Jemaa, Lyu, MingJu Amy, Qu, Mingnan, Perveen, Shahnaz, Khan, Naveed, Song, Qingfeng, Chen, Genyun, Zhu, XinGuang. Contrasting Responses of Plastid Terminal Oxidase Activity Under Salt Stress in Two C(4)Species With Different Salt Tolerance. FRONTIERS IN PLANT SCIENCE[J]. 2020, 11: https://doaj.org/article/f9257c8a1337436aa2325d578176895f.
[11] Song, Qingfeng, Srinivasan, Venkatraman, Long, Steve P, Zhu, XinGuang. Decomposition analysis on soybean productivity increase under elevated CO2 using 3-D canopy model reveals synergestic effects of CO2 and light in photosynthesis. ANNALS OF BOTANY[J]. 2020, 126(4): 601-614, https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7489077/.
[12] Liu, Yang, Zhu, Xinguang, He, Xiaoe, Li, Chao, Chang, Tiangen, Chang, Shuoqi, Zhang, Haiqing, Zhang, Yuzhu. Scheduling of nitrogen fertilizer topdressing during panicle differentiation to improve grain yield of rice with a long growth duration. SCIENTIFIC REPORTS[J]. 2020, 10(1): http://dx.doi.org/10.1038/s41598-020-71983-y.
[13] Chang, Shuoqi, Chang, Tiangen, Song, Qingfeng, Wu, Jun, Luo, Yi, Chen, Xiaolong, Zhu, XinGuang, Deng, Qiyun. Architectural and Physiological Features to Gain High Yield in an Elite Rice Line YLY1. RICE[J]. 2020, 13(1): http://dx.doi.org/10.1186/s12284-020-00419-y.
[14] Lyu, MingJu Amy, Wang, Yaling, Jiang, Jianjun, Liu, Xinyu, Chen, Genyun, Zhu, XinGuang. What Matters for C(4)Transporters: Evolutionary Changes of Phosphoenolpyruvate Transporter for C(4)Photosynthesis. FRONTIERS IN PLANT SCIENCE[J]. 2020, 11: https://doaj.org/article/1d64113fb91541a0a3a297954ff8fa58.
[15] Changsong Zou, Leiting Li, Daisuke Miki, Delin Li, Qiming Tang, Lihong Xiao, Santosh Rajput, Ping Deng, Li Peng, Wei Jia, Ru Huang, Meiling Zhang, Yidan Sun, Jiamin Hu, Xing Fu, Patrick S Schnable, Yuxiao Chang, Feng Li, Hui Zhang, Baili Feng, Xinguang Zhu, Renyi Liu, James C Schnable, JianKang Zhu, Heng Zhang. The genome of broomcorn millet. Nature Communications[J]. 2019, 10(1): 1-11, https://doaj.org/article/6c759c999b1146eaab35a80f61a1546e.
[16] Shi, Zai, Chang, TianGen, Chen, Genyun, Song, Qingfeng, Wang, Yanjie, Zhou, Zhiwei, Wang, Mengyao, Qu, Mingnan, Wang, Baoshan, Zhu, XinGuang. Dissection of mechanisms for high yield in two elite rice cultivars. FIELD CROPS RESEARCH[J]. 2019, 241: http://dx.doi.org/10.1016/j.fcr.2019.107563.
[17] Chang, TianGen, Zhao, Honglong, Wang, Ning, Song, QingFeng, Xiao, Yi, Qu, Mingnan, Zhu, XinGuang. A three-dimensional canopy photosynthesis model in rice with a complete description of the canopy architecture, leaf physiology, and mechanical properties. JOURNAL OF EXPERIMENTAL BOTANY[J]. 2019, 70(9): 2479-2490, [18] Li, Pan, Chang, Tiangen, Chang, Shuoqi, Ouyang, Xiang, Qu, Mingnan, Song, Qingfeng, Xiao, Langtao, Xia, Shitou, Deng, Qiyun, Zhu, XinGuang. Systems model-guided rice yield improvements based on genes controlling source, sink, and flow. JOURNAL OF INTEGRATIVE PLANT BIOLOGYnull. 2018, 60(12): 1154-1180, http://lib.cqvip.com/Qikan/Article/Detail?id=6100093528.
[19] 宋青峰, 曲明南, 徐建龙, 朱新广. 冠层光能利用效率改良的理论、分子途径及展望. 生命科学[J]. 2018, 30(10): 1044-1050, http://lib.cqvip.com/Qikan/Article/Detail?id=676857221.
[20] Song, Qingfeng, Wang, Yu, Qu, Mingnan, Ort, Donald R, Zhu, XinGuang. The impact of modifying photosystem antenna size on canopy photosynthetic efficiency-Development of a new canopy photosynthesis model scaling from metabolism to canopy level processes. PLANT CELL AND ENVIRONMENT[J]. 2017, 40(12): 2946-2957, http://dx.doi.org/10.1111/pce.13041.
[21] Chang, TianGen, Zhu, XinGuang. Source-sink interaction: a century old concept under the light of modern molecular systems biology. JOURNAL OF EXPERIMENTAL BOTANYnull. 2017, 68(16): 4417-4431, http://dx.doi.org/10.1093/jxb/erx002.
[22] Zhu Xinguang. Leaf photosynthetic parameters related to biomass accumulation in a global rice diversity panel. Plant Physiology. 2017, [23] Zhu Xinguang. ePlant for quantitative and predictive plant science research in the big data era. Quantitative Biology. 2017, [24] Essemine, Jemaa, Xiao, Yi, Qu, Mingnan, Mi, Hualing, Zhu, XinGuang. Cyclic electron flow may provide some protection against PSII photoinhibition in rice (Oryza sativa L.) leaves under heat stress. JOURNAL OF PLANT PHYSIOLOGY[J]. 2017, 211: 138-146, http://dx.doi.org/10.1016/j.jplph.2017.01.007.
[25] Wang, Yu, Song, Qingfeng, Jaiswal, Deepak, de Souza, Amanda P, Long, Stephen Patrick, Zhu, XinGuang. Development of a Three-Dimensional Ray-Tracing Model of Sugarcane Canopy Photosynthesis and Its Application in Assessing Impacts of Varied Row Spacing. BIOENERGY RESEARCH[J]. 2017, 10(3): 626-634, https://www.webofscience.com/wos/woscc/full-record/WOS:000406743700003.
[26] Chang Tiangen, Xin Changpeng, Qu Mingnan, Zhao Honglong, Song Qingfeng, Zhu Xinguang. Evaluation of Protocols for Measuring Leaf Photosynthetic Properties of Field-Grown Rice. RICE SCIENCE[J]. 2017, 24(1): 1-9, http://lib.cqvip.com/Qikan/Article/Detail?id=670859148.
[27] Chang, Shuoqi, Chang, Tiangen, Song, Qingfeng, Zhu, XinGuang, Deng, Qiyun. Photosynthetic and agronomic traits of an elite hybrid rice Y-Liang-You 900 with a record-high yield. FIELD CROPS RESEARCH[J]. 2016, 187: 49-57, http://dx.doi.org/10.1016/j.fcr.2015.10.011.
[28] Essemine, Jemaa, Qu, Mingnan, Mi, Hualing, Zhui, XinGuang. Response of Chloroplast NAD(P)H Dehydrogenase-Mediated Cyclic Electron Flow to a Shortage or Lack in Ferredoxin-Quinone Oxidoreductase-Dependent Pathway in Rice Following Short-Term Heat Stress. FRONTIERS IN PLANT SCIENCE[J]. 2016, 7: https://doaj.org/article/38ef7ce7fe4942df9a4f6599ddef8535.
[29] Cao, Chensi, Xu, Jiajia, Zheng, Guangyong, Zhu, XinGuang. Evidence for the role of transposons in the recruitment of cis-regulatory motifs during the evolution of C4 photosynthesis. BMC GENOMICS[J]. 2016, 17(1): http://dx.doi.org/10.1186/s12864-016-2519-3.
[30] Song, Qingfeng, Chu, Chengcai, Parry, Martin A J, Zhu, XinGuang. Genetics-based dynamic systems model of canopy photosynthesis: the key to improve light and resource use efficiencies for crops. FOOD AND ENERGY SECURITYnull. 2016, 5(1): 18-25, https://www.webofscience.com/wos/woscc/full-record/WOS:000370665200002.
[31] Anonymous. Peer review report 2 On "A new canopy photosynthesis and transpiration measurement system (CAPTS) for canopy gas exchange research". Agricultural and Forest Meteorology. 2016, 217: 118-118, http://dx.doi.org/10.1016/j.agrformet.2016.01.107.
[32] Tao, Yimin, Lyu, MingJu Amy, Zhu, XinGuang. Transcriptome comparisons shed light on the pre-condition and potential barrier for C-4 photosynthesis evolution in eudicots. PLANT MOLECULAR BIOLOGY[J]. 2016, 91(1-2): 193-209, https://www.webofscience.com/wos/woscc/full-record/WOS:000374679700013.
[33] Xin, ChangPeng, Tholen, Danny, Devloo, Vincent, Zhu, XinGuang. The Benefits of Photorespiratory Bypasses: How Can They Work?. PLANT PHYSIOLOGY[J]. 2015, 167(2): 574-585, http://dx.doi.org/10.1104/pp.114.248013.
[34] Long, Stephen P, MarshallColon, Amy, Zhu, XinGuang. Meeting the Global Food Demand of the Future by Engineering Crop Photosynthesis and Yield Potential. CELLnull. 2015, 161(1): 56-66, http://dx.doi.org/10.1016/j.cell.2015.03.019.
[35] Hamdani, Saber, Qu, Mingnan, Xin, ChangPeng, Li, Ming, Chu, Chengcai, Govindjee, Zhu, XinGuang. Variations between the photosynthetic properties of elite and landrace Chinese rice cultivars revealed by simultaneous measurements of 820 nm transmission signal and chlorophyll a fluorescence induction. JOURNAL OF PLANT PHYSIOLOGY[J]. 2015, 177: 128-138, http://dx.doi.org/10.1016/j.jplph.2014.12.019.
[36] Lyu, MingJu Amy, Gowik, Udo, Kelly, Steve, Covshoff, Sarah, Mallmann, Julia, Westhoff, Peter, Hibberd, Julian M, Stata, Matt, Sage, Rowan F, Lu, Haorong, Wei, Xiaofeng, Wong, Gane KaShu, Zhu, XinGuang. RNA-Seq based phylogeny recapitulates previous phylogeny of the genus Flaveria (Asteraceae) with some modifications. BMC EVOLUTIONARY BIOLOGY[J]. 2015, 15(1): http://dx.doi.org/10.1186/s12862-015-0399-9.
[37] Stitt, Mark, Zhu, XinGuang. The large pools of metabolites involved in intercellular metabolite shuttles in C-4 photosynthesis provide enormous flexibility and robustness in a fluctuating light environment. PLANT CELL AND ENVIRONMENTnull. 2014, 37(9): 1985-1988, https://www.webofscience.com/wos/woscc/full-record/WOS:000340292400002.
[38] Wang, Yu, Braeutigam, Andrea, Weber, Andreas P M, Zhu, XinGuang. Three distinct biochemical subtypes of C-4 photosynthesis? A modelling analysis. JOURNAL OF EXPERIMENTAL BOTANY[J]. 2014, 65(13): 3567-3578, http://dx.doi.org/10.1093/jxb/eru058.
[39] Yu, Xianbin, Zheng, Guangyong, Shan, Lanlan, Meng, Guofeng, Vingron, Martin, Liu, Qi, Zhu, XinGuang. Reconstruction of gene regulatory network related to photosynthesis in Arabidopsis thaliana. FRONTIERS IN PLANT SCIENCE[J]. 2014, 5: https://doaj.org/article/fea9e8548fa44d04b634c26957572585.
[40] Chen, Taiyu, Zhu, XinGuang, Lin, Yongjun. Major alterations in transcript profiles between C-3-C-4 and C-4 photosynthesis of an amphibious species Eleocharis baldwinii. PLANT MOLECULAR BIOLOGY[J]. 2014, 86(1-2): 93-110, https://www.webofscience.com/wos/woscc/full-record/WOS:000340619900007.
[41] Li, Yuanyuan, Xu, Jiajia, Ul Haq, Noor, Zhang, Hui, Zhu, XinGuang. Was low CO2 a driving force of C-4 evolution: Arabidopsis responses to long-term low CO2 stress. JOURNAL OF EXPERIMENTAL BOTANY[J]. 2014, 65(13): 3657-3667, http://dx.doi.org/10.1093/jxb/eru193.
[42] Yu Wang, Stephen P Long, XinGuang Zhu. Elements Required for an Efficient NADP-Malic Enzyme Type C4 Photosynthesis 1 C W OPEN. Plant Physiology. 2014, 164(4): 2231-2246, https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3982775/.
[43] Jiang, Chunyun, Tholen, Danny, Xu, Jiajia Mercedes, Xin, Changpeng, Zhang, Hui, Zhu, Xinguang, Zhao, Yanxiu. Increased expression of mitochondria-localized carbonic anhydrase activity resulted in an increased biomass accumulation in Arabidopsis thaliana. JOURNAL OF PLANT BIOLOGY[J]. 2014, 57(6): 366-374, https://www.webofscience.com/wos/woscc/full-record/WOS:000345399400006.
[44] Sun, Jindong, Feng, Zhaozhong, Leakey, Andrew D B, Zhu, Xinguang, Bernacchi, Carl J, Ort, Donald R. Inconsistency of mesophyll conductance estimate causes the inconsistency for the estimates of maximum rate of Rubisco carboxylation among the linear, rectangular and non-rectangular hyperbola biochemical models of leaf photosynthesis-A case study of CO2 enrichment and leaf aging effects in soybean. PLANT SCIENCE[J]. 2014, 226: 49-60, http://dx.doi.org/10.1016/j.plantsci.2014.06.015.
[45] Song, Qingfeng, Zhang, Guilian, Zhu, XinGuang. Optimal crop canopy architecture to maximise canopy photosynthetic CO2 uptake under elevated CO2 - a theoretical study using a mechanistic model of canopy photosynthesis. FUNCTIONAL PLANT BIOLOGY[J]. 2013, 40(2): 109-124, http://dx.doi.org/10.1071/FP12056.
[46] Peng, Yu, Leung, Henry C M, Yiu, SiuMing, Lv, MingJu, Zhu, XinGuang, Chin, Francis Y L. IDBA-tran: a more robust de novo de Bruijn graph assembler for transcriptomes with uneven expression levels. BIOINFORMATICS[J]. 2013, 29(13): 326-334, https://www.webofscience.com/wos/woscc/full-record/WOS:000321746100036.
[47] Xu, Jiajia, Li, Yuanyuan, Ma, Xiuling, Ding, Jianfeng, Wang, Kai, Wang, Sisi, Tian, Ye, Zhang, Hui, Zhu, XinGuang. Whole transcriptome analysis using next-generation sequencing of model species Setaria viridis to support C-4 photosynthesis research. PLANT MOLECULAR BIOLOGY[J]. 2013, 83(1-2): 77-87, http://dx.doi.org/10.1007/s11103-013-0025-4.
[48] Zhu, XinGuang, Wang, Yu, Ort, Donald R, Long, Stephen P. e-photosynthesis: a comprehensive dynamic mechanistic model of C3 photosynthesis: from light capture to sucrose synthesis. PLANT CELL AND ENVIRONMENTnull. 2013, 36(9): 1711-1727, https://www.webofscience.com/wos/woscc/full-record/WOS:000322709300013.
[49] Xin, ChangPeng, Yang, Jin, Zhu, XinGuang. A model of chlorophyll a fluorescence induction kinetics with explicit description of structural constraints of individual photosystem II units. PHOTOSYNTHESIS RESEARCH[J]. 2013, 117(1-3): 339-354, https://www.webofscience.com/wos/woscc/full-record/WOS:000326604900023.
[50] Gane KaShu Wong, Rowan F Sage, Julian M Hibberd, Sarah Covshoff, Steve Kelly, Peter Westhoff, Udo Gowik, XinGuang Zhu, MingJu Amy Lyu, Martha Ludwig. The coordination of major events in C4 photosynthesis evolution in the genus Flaveria. Springer. 

   

（ 1 ） C4光合作用的调控及进化, 主持, 国家级, 2015-08--2019-08
（ 2 ） 绿色超级稻品种理想冠层模型与调控技术建立, 主持, 国家级, 2014-01--2018-12
（ 3 ） 水稻高产稳产系统模型构建及模拟计算, 主持, 部委级, 2013-08--2018-07
（ 4 ） 植物冠层光合作用的系统生物学研究, 主持, 部委级, 2015-01--2017-12
（ 5 ） Realizing Increased Photosynthetic Efficiency for Sustainable Increases in Crop Yield, 主持, 研究所（学校）, 2012-10--2017-10
（ 6 ） Enhancing biomass production from marginal lands with perennial grasses, 主持, 研究所（学校）, 2011-10--2015-09
（ 7 ） C4 Rice Phase2:supercharging Photosynthesis, 主持, 研究所（学校）, 2013-01--2015-12
（ 8 ） C4-Rice Phase III, 参与, 国家级, 2016-01--2019-01

（1）Evolution versus artificial design for enhanced photosynthetic effieincy.   2015-11-15
（2）Redesigning crops for increased yield and resource use efficeincy   2015-10-23
（3）Changchun. Molecular mechanisms of C4 evolution   2015-10-09
（4）Development of a generic crop growth and development model to support biomass crop breeding   2015-09-07
（5）Modeling photosynthesis at cell and tissue levels.   2015-06-15
（6）The role of low CO2 during evolution of C4 photosynthesis   2015-06-01
（7）Modelling of sink-source partitioning   2015-03-06
（8）The role of low CO2 during the evolution of C4 photosynthesis   2015-01-10
（9）ePlant: a modeling framework to support engineering crops for improved water and radiation use efficiencies   2014-11-04
（10）Reclassficiation of C4 photosynthesis in Nature   2014-08-15
（11）Rationale design of photosynthetic metabolism for increased efficiency   2014-07-02
（12）Rationale design of photosynthetic metabolism for increased efficiency.   2014-06-21
（13）Special features of C4 photosynthesis in Setaria viridis.    2014-03-10

已指导学生

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