病毒进化

病毒组

基因组流行病学

   

071005-微生物学
0710J3-生物信息学

病毒进化
病毒圈
基因组流行病学

2008-09--2011-06   华东师范大学   博士

   

2019-03~现在, 中国科学院上海巴斯德研究所, 研究员
2014-02~2016-02,杜克大学－新加坡国立大学医学院, 博士后
2012-10~2013-10,悉尼大学, 博士后
2011-08~2012-09,宾夕法尼亚州立大学, 博士后

病原生物信息学
生物信息学引论

   

[1] Zhou, Yonghong, Le Van Tan, Luo, Kaiwei, Liao, Qiaohong, Wang, Lili, Qiu, Qi, Zou, Gang, Liu, Ping, Nguyen To Anh, Nguyen Thi Thu Hong, He, Min, Wei, Xiaoman, Yu, Shuanbao, Lam, Tommy TsanYuk, Cui, Jie, van Doorn, H Rogier, Yu, Hongjie. Genetic Variation of Multiple Serotypes of Enteroviruses Associated with Hand, Foot and Mouth Disease in Southern China. VIROLOGICA SINICA[J]. 2021, 36(1): 61-74, https://www.webofscience.com/wos/woscc/full-record/WOS:000553266000002.
[2] Song, Yuhe, Li, Xiang, Wei, Xiaoman, Cui, Jie. Human Endogenous Retroviruses as Biomedicine Markers. VIROLOGICA SINICAnull. 2021, 36(5): 852-858, http://dx.doi.org/10.1007/s12250-021-00387-7.
[3] Li, Xiang, Song, Yuhe, Wong, Gary, Cui, Jie. Bat origin of a new human coronavirus: there and back again. SCIENCE CHINA-LIFE SCIENCESnull. 2020, 63(3): 461-462, http://lib.cqvip.com/Qikan/Article/Detail?id=7101235362.
[4] 崔杰. 病毒如何与人类共进化——内源性逆转录病毒的秘密. 科学. 2020, 72(3): 50-53+4, http://lib.cqvip.com/Qikan/Article/Detail?id=7101993364.
[5] Li, Xiang, Song, Yuhe, Wong, Gary, Cui, Jie. Bat origin of a new human coronavirus: there and back again (vol 63, pg 461, 2020). SCIENCE CHINA-LIFE SCIENCESnull. 2020, 63(7): 1098-1098, https://www.webofscience.com/wos/woscc/full-record/WOS:000524621300001.
[6] Hu, Chuanxia, Li, Xiaofang, Zhu, Caihui, Zhou, Feng, Tang, Wangjun, Wu, Di, Li, Zhihui, Zhou, Lichen, Liu, Jing, Wei, Xiaoman, Cui, Jie, Wang, Tianhou, He, Guimei. Co-circulation of multiple reassortant H6 subtype avian influenza viruses in wild birds in eastern China, 2016-2017. VIROLOGY JOURNAL[J]. 2020, 17(1): http://dx.doi.org/10.1186/s12985-020-01331-z.
[7] Yicong Chen, Mingyue Chen, Xiaoyan Duan, Jie Cui. Ancient origin and complex evolution of porcine endogenous retroviruses. Biosafety and Health[J]. 2020, 2(3): 142-151, http://dx.doi.org/10.1016/j.bsheal.2020.03.003.
[8] Chen, Mingyue, Tachedjian, Mary, Marsh, Glenn A, Cui, Jie, Wang, LinFa. Distinct Cell Transcriptomic Landscapes Upon Henipavirus Infections. FRONTIERS IN MICROBIOLOGY[J]. 2020, 11: https://doaj.org/article/61fa85021cc34bc1a0de1d661d8641e1.
[9] Tang, Xiaolu, Wu, Changcheng, Li, Xiang, Song, Yuhe, Yao, Xinmin, Wu, Xinkai, Duan, Yuange, Zhang, Hong, Wang, Yirong, Qian, Zhaohui, Cui, Jie, Lu, Jian. On the origin and continuing evolution of SARS-CoV-2. NATIONAL SCIENCE REVIEW[J]. 2020, 7(6): 1012-1023, http://lib.cqvip.com/Qikan/Article/Detail?id=7102365798.
[10] Ma, Xiaoqian, Mo, Zhaohui, Chen, Yicong, Rong, Pengfei, Zhang, Shengwang, Zhang, Juan, Dong, Qiong, Yang, Cejun, Yang, Min, Duan, Guangqian, Luo, Minhua, Cui, Jie, Wang, Wei. A PILOT CLINICAL TRIAL OUTCOME OF BIOSAFETY SYSTEM EVALUATION FOR PERV-C FREE PORCINE ISLET XENOTRANSPLANTATION BASED ON PRINCIPLE OF WHO "CHANGSHA COMMUNIQUE". TRANSPLANTATIONnull. 2020, 104(9): S9-S9, https://www.webofscience.com/wos/woscc/full-record/WOS:000618872100014.
[11] Xiaoman Wei, Xiang Li, Jie Cui. Evolutionary Perspectives on Novel Coronaviruses Identified in Pneumonia Cases in China. National Science Review. 2020, [12] Xiang Li, Yuhe Song, Gary Wong, Jie Cui. Erratum to: Bat origin of a new human coronavirus: there and back again. 中国科学:生命科学英文版. 2020, 63(7): 1098-1098, http://lib.cqvip.com/Qikan/Article/Detail?id=7102303908.
[13] Yu, Ping, Hu, Ben, Shi, ZhengLi, Cui, Jie. Geographical structure of bat SARS-related coronaviruses. INFECTION GENETICS AND EVOLUTIONnull. 2019, 69: 224-229, http://www.corc.org.cn/handle/1471x/2373179.
[14] Chen, Yicong, Wei, Xiaoman, Zhang, Guojie, Holmes, Edward C, Cui, Jie. Identification and evolution of avian endogenous foamy viruses. VIRUS EVOLUTION[J]. 2019, 5(2): http://dx.doi.org/10.1093/ve/vez049.
[15] Wei, Xiaoman, Chen, Yicong, Duan, Guangqian, Holmes, Edward C, Cui, Jie. A reptilian endogenous foamy virus sheds light on the early evolution of retroviruses. VIRUS EVOLUTION[J]. 2019, 5(1): https://www.webofscience.com/wos/woscc/full-record/WOS:000482719300017.
[16] Chen, Mingyue, Cui, Jie. Discovery of endogenous retroviruses with mammalian envelopes in avian genomes uncovers long-term bird-mammal interaction. VIROLOGY[J]. 2019, 530: 27-31, http://dx.doi.org/10.1016/j.virol.2019.02.005.
[17] Cui, Jie, Li, Fang, Shi, ZhengLi. Origin and evolution of pathogenic coronaviruses. NATURE REVIEWS MICROBIOLOGYnull. 2019, 17(3): 181-192, http://www.corc.org.cn/handle/1471x/2373170.
[18] Xiaoman Wei, Jie Cui. Why were so few people infected with H7N9 influenza A viruses in China from late 2017 to 2018?. 中国科学:生命科学英文版[J]. 2018, 61(11): 1442-1444, http://lib.cqvip.com/Qikan/Article/Detail?id=6100053415.
[19] Liu, Jiafa, Xu, Junqiang, Liu, Linlin, Wei, Xiaoman, Song, Yi, Fang, Bin, Yu, Xiao, Li, Xiang, Ye, Guojun, Du, Yingying, Chen, Mingyue, Shi, Weifeng, Liu, Di, Holmes, Edward C, Cui, Jie. Sudden emergence of human infections with H7N9 avian influenza A virus in Hubei province, central China. SCIENTIFIC REPORTS[J]. 2018, 8(1): http://www.corc.org.cn/handle/1471x/2373312.
[20] Wei Zhang, Ben Hu, JiaZheng Xie, Bei Li, XiaoShuang Zheng, Peter Daszak, DongSheng Luo, XuRui Shen, XingLou Yang, MeiNiang Wang, ZhengLi Shi, LeiPing Zeng, XingYi Ge, Ning Wang, LinFa Wang, Jie Cui, YunZhi Zhang. Discovery of a rich gene pool of bat SARS-related coronaviruses provides new insights into the origin of SARS coronavirus. Public Library of Science. 2017, http://oa.las.ac.cn/oainone/service/browseall/read1?ptype=JA&workid=JA201902016817751ZK.
[21] Wei, Xiaoman, Chen, Mingyue, Cui, Jie. Bayesian evolutionary analysis for emerging infectious disease: an exemplified application for H7N9 avian influenza viruses. SCIENCE CHINA-LIFE SCIENCESnull. 2017, 60(12): 1392-1395, http://www.corc.org.cn/handle/1471x/2373346.
[22] Du, Yingying, Chen, Mingyue, Yang, Jiayun, Jia, Yane, Han, Shufang, Holmes, Edward C, Cui, Jie. Molecular Evolution and Emergence of H5N6 Avian Influenza Virus in Central China. JOURNAL OF VIROLOGY[J]. 2017, 91(12): http://www.corc.org.cn/handle/1471x/2373424.
[23] Wang, Hongbo, Zhao, Yingchao, Chen, Mingyue, Cui, Jie. Identification of Novel Long Non-coding and Circular RNAs in Human Papillomavirus-Mediated Cervical Cancer. FRONTIERS IN MICROBIOLOGY[J]. 2017, 8: http://www.corc.org.cn/handle/1471x/2373389.
[24] Li, Xuyong, Yang, Jiayun, Liu, Bin, Jia, Yane, Guo, Jing, Gao, Xue, Weng, Shaoting, Yang, Maijuan, Wang, Liang, Wang, LinFa, Cui, Jie, Chen, Hualan, Zhu, Qiyun. Co-circulation of H5N6, H3N2, H3N8, and Emergence of Novel Reassortant H3N6 in a Local Community in Hunan Province in China. SCIENTIFIC REPORTS[J]. 2016, 6: http://dx.doi.org/10.1038/srep25549.
[25] Jie Cui, LinFa Wang, Johnson Mak, Peter Walker, Marcus Thomas Gilbert. Genomic Mining Reveals Deep Evolutionary Relationships between Bornaviruses and Bats. Viruses[J]. 2015, 7(11): 5792-5800, https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4664979/.
[26] Cui, Jie, Tachedjian, Gilda, Wang, LinFa. Bats and Rodents Shape Mammalian Retroviral Phylogeny. SCIENTIFIC REPORTS[J]. 2015, 5: https://www.webofscience.com/wos/woscc/full-record/WOS:000364295400003.
[27] Cui, Jie, Schlub, Timothy E, Holmes, Edward C. An Allometric Relationship between the Genome Length and Virion Volume of Viruses. JOURNAL OF VIROLOGY[J]. 2014, 88(11): 6403-6410, http://dx.doi.org/10.1128/JVI.00362-14.
[28] Cui, Jie, Zhao, Wei, Huang, Zhiyong, Jarvis, Erich D, Gilbert, M Thomas P, Walker, Peter J, Holmes, Edward C, Zhang, Guojie. Low frequency of paleoviral infiltration across the avian phylogeny. GENOME BIOLOGY[J]. 2014, 15(12): http://dx.doi.org/10.1186/s13059-014-0539-3.
[29] Hayward, Joshua A, Tachedjian, Mary, Cui, Jie, Field, Hume, Holmes, Edward C, Wang, LinFa, Tachedjian, Gilda. Identification of diverse full-length endogenous betaretroviruses in megabats and microbats. RETROVIROLOGY[J]. 2013, 10(1): 35-35, http://dx.doi.org/10.1186/1742-4690-10-35.
[30] Cui, Jie, Eden, JohnSebastian, Holmes, Edward C, Wang, LinFa. Adaptive evolution of bat dipeptidyl peptidase 4 (dpp4): implications for the origin and emergence of Middle East respiratory syndrome coronavirus. VIROLOGY JOURNAL[J]. 2013, 10(1): 304-304, http://dx.doi.org/10.1186/1743-422X-10-304.
[31] Wang, Lina, Yin, Qiuyuan, He, Guimei, Rossiter, Stephen J, Holmes, Edward C, Cui, Jie. Ancient invasion of an extinct gammaretrovirus in cetaceans. VIROLOGY[J]. 2013, 441(1): 66-69, http://dx.doi.org/10.1016/j.virol.2013.03.006.
[32] Cui, Jie, Holmes, Edward C. Evidence for an endogenous papillomavirus-like element in the platypus genome. JOURNAL OF GENERAL VIROLOGY[J]. 2012, 93(Pt 6): 1362-1366, https://www.webofscience.com/wos/woscc/full-record/WOS:000305360900022.
[33] Cui, Jie, Holmes, Edward C. Endogenous Hepadnaviruses in the Genome of the Budgerigar (Melopsittacus undulatus) and the Evolution of Avian Hepadnaviruses. JOURNAL OF VIROLOGY[J]. 2012, 86(14): 7688-7691, https://www.webofscience.com/wos/woscc/full-record/WOS:000306098100021.
[34] Cui, Jie, Tachedjian, Mary, Wang, Lina, Tachedjian, Gilda, Wang, LinFa, Zhang, Shuyi. Discovery of Retroviral Homologs in Bats: Implications for the Origin of Mammalian Gammaretroviruses. JOURNAL OF VIROLOGY[J]. 2012, 86(8): 4288-4293, http://dx.doi.org/10.1128/JVI.06624-11.
[35] Nielsen, Alex Christian Yde, Gyhrs, Mette Louise, Holmes, Edward C, Cui, Jie. Co-Circulation and Persistence of Genetically Distinct Saffold Viruses, Denmark. EMERGING INFECTIOUS DISEASESnull. 2012, 18(10): 1694-1696, https://doaj.org/article/1d571428b86c4cbc82accc0ac5022733.
[36] Cui, Jie, Holmes, Edward C. Endogenous RNA viruses of plants in insect genomes. VIROLOGY[J]. 2012, 427(2): 77-79, http://dx.doi.org/10.1016/j.virol.2012.02.014.
[37] Cui, Jie, Tachedjian, Gilda, Tachedjian, Mary, Holmes, Edward C, Zhang, Shuyi, Wang, LinFa. Identification of diverse groups of endogenous gammaretroviruses in mega- and microbats. JOURNAL OF GENERAL VIROLOGY[J]. 2012, 93(Pt 9): 2037-2045, http://dx.doi.org/10.1099/vir.0.043760-0.
[38] Cui, Jie, Holmes, Edward C. Endogenous Lentiviruses in the Ferret Genome. JOURNAL OF VIROLOGY[J]. 2012, 86(6): 3383-3385, https://www.webofscience.com/wos/woscc/full-record/WOS:000300634100045.

（1） Bats and Reverse Transcribing RNA and DNA Viruses, Wiley-Blackwell, 2015-07, 第 3 作者

   

（ 1 ） 中国科学院, 主持, 部委级, 2016-02--2019-02
（ 2 ） 动物流感病毒进化模型构建, 主持, 国家级, 2016-07--2020-12
（ 3 ） 内源逆转录病毒及嗜肝DNA病毒介导的鸟类基因组重排研究, 主持, 国家级, 2017-01--2020-12
（ 4 ） HIV病毒潜伏库清除新策略研究, 主持, 国家级, 2018-01--2020-12
（ 5 ） 水生无脊椎动物内源性病毒组研究, 主持, 国家级, 2019-01--2022-12

已指导学生

喻萍  硕士研究生  071010-生物化学与分子生物学  

陈毅聪  硕士研究生  071010-生物化学与分子生物学  

魏小曼  博士研究生  071005-微生物学  

张誉译  硕士研究生  085238-生物工程  

樊天娇  博士研究生  071009-细胞生物学  

现指导学生

王晓静  博士研究生  071009-细胞生物学  

李逸岸  博士研究生  071005-微生物学  

余俊单  硕士研究生  086000-生物与医药  

廖蒙恩  硕士研究生  100103-病原生物学  

李祥  博士研究生  071005-微生物学  

谢蕴怡  硕士研究生  086000-生物与医药