基本信息
鲍一明  男  博导  中国科学院北京基因组研究所(国家生物信息中心)
电子邮件: baoym@big.ac.cn
通信地址: 北京市朝阳区北辰西路1号104楼
邮政编码:

招生信息

   
招生专业
071021-生物信息学
071022-基因组学
招生方向
生物数据库,病毒基因组注释,病毒进化与分类

教育背景

1991-01--1994-10   英国东英吉利大学   博士
1983-09--1987-07   北京大学   学士

工作经历

   
工作简历
2001-07~2017-03,美国国家生物信息中心, Staff Scientist
1994-11~2001-07,美国Noble基金会, 高级研究助理
1987-07~1991-01,北京大学, 助教
社会兼职
2019-06-05-今,国家基因组科学数据中心, 主任
2018-07-29-2021-07-28,中国科学院大学健康医疗大数据国家研究院, 副院长

教授课程

生物信息大数据挖掘分析和实践

出版信息

   
发表论文
[1] Xiong, Zhuang, Yang, Fei, Li, Mengwei, Ma, Yingke, Zhao, Wei, Wang, Guoliang, Li, Zhaohua, Zheng, Xinchang, Zou, Dong, Zong, Wenting, Kang, Hongen, Jia, Yaokai, Li, Rujiao, Zhang, Zhang, Bao, Yiming. EWAS Open Platform: integrated data, knowledge and toolkit for epigenome-wide association study. NUCLEIC ACIDS RESEARCH[J]. 2022, 50(D1): D1004-D1009, [2] Xue, Yongbiao, Bao, Yiming, Zhang Zhang, Zhao, Wenming, Xiao, Jingfa, He, Shunmin, Zhang, Guoqing, Li, Yixue, Guoping, Zhao, Chen, Runsheng, Zeng, Jingyao, Zhang, Yadong, Shang, Yunfei, Mai, Jialin, Shi, Shuo, Lu, Mingming, Bu, Congfan, Zhang, Zhewen, Du, Zhenglin, Wang, Yinying, Kang, Hongen, Xu, Tianyi, Hao, Lili, Jia, Peilin, Jiang, Shuai, Qian, Qiheng, Zhu, Tongtong, Shang, Yunfei, Zong, Wenting, Jin, Tong, Zhang, Yuansheng, Zou, Dong, Zhang, Zhang, Du, Qiang, Feng, Changrui, Ma, Lina, Zhang, Sisi, Wang, Anke, Dong, Lili, Wang, Yanqing, Liu, Wan, Yan, Xing, Ling, Yunchao, Zhao, Guoping, Zhou, Zhihua, Kang, Wang, Zhang, Tao, Ma, Shuai, Yan, Haoteng, Liu, Zunpeng, Ji, Zejun, Cai, Yusheng, Wang, Si, Song, Moshi, Ren, Jie, Zhou, Qi, Qu, Jing, Zhang, Weiqi, Liu, Guanghui, Chen, Xu, Chen, Tingting, Sisi, Zhang, Sun, Yanling, Yu, Caixia, Tang, Bixia, Zhu, Junwei, Zhai, Shuang, Sun, Yubin, Chen, Qiancheng, Yang, Xiaoyu, Zhang, Xin, Sang, Zhengqi, Wang, Yonggang, Zhao, Yilin, Chen, Huanxin, Lan, Li, Wang, Yanqing, Ma, Yingke, Jia, Yaokai, Zheng, Xinchang, Chen, Meili, Dong, Zou, Zhu, Tongtong, Ming, Chen, Niu, Guangyi, Pan, Rong, Jing, Wei, Sang, Jian, Liu, Chang, Xiong, Yujia, Lili, Hao, Zhang, Mochen, Wang, Guoliang, Yi, Lizhi, Wei, Zhao, Zong, Wenting, Wu, Song, Xiong, Zhuang, Rujiao, Li, Zheng, Gong, Li, Rujiao, Liu, Lin, Li, Zhao, Li, Qianpeng, Wei, Jing, Luo, Sicheng, Wang, Jiajia, Shi, Yirong, Zhou, Honghong, Zhang, Peng, Song, Tingrui, Li, Yanyan, Yang, Fei, Li, Mengwei, Li, Zhaohua, Kang, Hongen, Zheng, Xinchang, Li, Rujiao, Tian, Dongmei, Liu, Xiaonan, Li, Cuiping, Teng, Xufei, Song, Shuhui, Zhang, Yang, Niu, Guangyi, Zhu, Tongtong, Zhang, Yuansheng, Chen, Ruru, Zhang, Rongqin, Xu, Feng, Wang, Yifan, Ling, Yunchao, Zhou, Chenfen, Wang, Haizhou, Teschendorff, Andrew E, He, Yungang, Zhen, Yang, Li, Cuiping, Zhu, Junwei, Li, Lun, Li, Na, Gong, Zheng, Chen, Meili, Ying Cui, Duan, Guangya, Tong, Jin, Wu, Gangao, Huang, Tianhao, Jin, Enhui, Zhao, Wei, Kang, Hailong, Wang, Zhonghuang, Zeng, Jingyao, Chen, Hua, Li, Mingkun, Zhao, Wenming, Ning, Wanshan, Xue, Yu, Liu, Yanhu, Cui, Ying, Zhou, Qijun, Liu, Xingyan, Zhang, Longlong, Mao, Bingyu, Zhang, Shihua, Zhang, Yaping, Wang, Guodong, Zhu, Qianghui, Li, Xin, Li, Menghua, Liu, Yuanming, Luo, Hong, Wu, Xiaoyuan, Jing, Haichun, Pan, Yitong, Chen, Ming, Ma, Lina, Shi, Leisheng, Li, Mingkun, Lan, Li, Bao, Yiming, Zhao, Wenming, Zuo, Zhixiang, Ren, Jian, Zhang, Xinxin, Xiao, Yun, Li, Xia, Liu, Dan, Zhang, Chi, Xue, Yu, Zhao, Zheng, Jiang, Tao, Wu, Wanying, Zhao, Fangqing, Meng, Xianwen, Peng, Di, Luo, Hao, Gao, Feng, Lin, Shaofeng, Liu, Chuijie, Guo, Anyuan, Yuan, Hao, Su, Tianhan, Zhang, Yong E, Zhou, Yincong, Zhang, Weizhi, Fu, Shanshan, Tan, Xiaodan, Xie, Yubin, Guo, Guoji, Wang, Chenwei, Liao, Xingyu, Gao, Xin, Wang, Jianxin, Xie, Guiyan, Yuan, Chunhui, Tian, Feng, Yang, Dechang, Tang, Dachao, Wu, Wenyi, Gou, Yujie, Han, Cheng, Cui, Qinghua, Li, Xiang Shang, Li, ChuanYun, Luo, XiaoTong, Ren, Jia, Li, Xia, CNCBNGDC Members Partners. Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022. NUCLEIC ACIDS RESEARCH[J]. 2022, 50(D1): D27-D38, [3] Zhang, Yuansheng, Zou, Dong, Zhu, Tongtong, Xu, Tianyi, Chen, Ming, Niu, Guangyi, Zong, Wenting, Pan, Rong, Jing, Wei, Sang, Jian, Liu, Chang, Xiong, Yujia, Sun, Yubin, Zhai, Shuang, Chen, Huanxin, Zhao, Wenming, Xiao, Jingfa, Bao, Yiming, Hao, Lili, Zhang, Zhang. Gene Expression Nebulas (GEN): a comprehensive data portal integrating transcriptomic profiles across multiple species at both bulk and single-cell levels. NUCLEIC ACIDS RESEARCH[J]. 2022, 50(D1): D1016-D1024, [4] Kang, Wang, Jin, Tong, Zhang, Tao, Ma, Shuai, Yan, Haoteng, Liu, Zunpeng, Ji, Zhejun, Cai, Yusheng, Wang, Si, Song, Moshi, Ren, Jie, Hu, Baoyang, Zhou, Qi, Zhang, Weiqi, Qu, Jing, Bao, Yiming, Liu, GuangHui. Regeneration Roadmap: database resources for regenerative biology. NUCLEIC ACIDS RESEARCH[J]. 2022, 50(D1): D1085-D1090, [5] 李茹姣, 张欣, 宋述慧, 王彦青, 邹东, 肖景发, 赵文明, 章张, 鲍一明. 基因组科学数据的安全管理与应用. 大数据[J]. 2021, 8(1): 37-45, http://lib.cqvip.com/Qikan/Article/Detail?id=7106421730.
[6] Nashaiman Pervaiz, Hongen Kang, Yiming Bao, Amir Ali Abbasi. Molecular evolutionary analysis of human primary microcephaly genes. BMC ECOLOGY AND EVOLUTION[J]. 2021, 21(1): http://dx.doi.org/10.1186/s12862-021-01801-0.
[7] Chen, Meili, Ma, Yingke, Wu, Song, Zheng, Xinchang, Kang, Hongen, Sang, Jian, Xu, Xingjian, Hao, Lili, Li, Zhaohua, Gong, Zheng, Xiao, Jingfa, Zhang, Zhang, Zhao, Wenming, Bao, Yiming. Genome Warehouse: A Public Repository Housing Genome-scale Data. GENOMICS PROTEOMICS & BIOINFORMATICS[J]. 2021, 19(4): 584-589, http://dx.doi.org/10.1016/j.gpb.2021.04.001.
[8] Aging Atlas Consortium, Zhang, Weiqi, Qu, Jing, Bao, Yiming, Liu, GuangHui. Aging Atlas: a multi-omics database for aging biology. NUCLEIC ACIDS RESEARCH[J]. 2021, 49(D1): D825-D830, http://dx.doi.org/10.1093/nar/gkaa894.
[9] 张思思, 陈旭, 陈婷婷, 朱军伟, 唐碧霞, 王安可, 董丽莉, 张哲文, 孙艳玲, 俞彩霞, 翟爽, 孙玉彬, 陈焕新, 杜政霖, 肖景发, 章张, 鲍一明, 王彦青, 赵文明. GSA-Human:人类遗传资源数据管理的公共系统. 遗传. 2021, 43(10): 988-993, [10] Xue, Yongbiao, Bao, Yiming, Zhang, Zhang, Zhao, Wenming, Xiao, Jingfa, He, Shunmin, Zhang, Guoqing, Li, Yixue, Zhao, Guoping, Chen, Runsheng, Song, Shuhui, Ma, Lina, Zou, Dong, Tian, Dongmei, Li, Cuiping, Zhu, Junwei, Gong, Zheng, Chen, Meili, Wang, Anke, Ma, Yingke, Li, Mengwei, Teng, Xufei, Cui, Ying, Duan, Guangya, Zhang, Mochen, Jin, Tong, Shi, Chengmin, Du, Zhenglin, Zhang, Yadong, Liu, Chuandong, Li, Rujiao, Zeng, Jingyao, Hao, Lili, Jiang, Shuai, Chen, Hua, Han, Dali, Yongbiao, Xue, Zhang, Tao, Kang, Wang, Qu, Jing, Zhang, Weiqi, Liu, GuangHui, Liu, Lin, Zhang, Yang, Niu, Guangyi, Zhu, Tongtong, Feng, Changrui, Liu, Xiaonan, Zhang, Yuansheng, Li, Zhao, Chen, Ruru, Li, Qianpeng, Hua, Zhongyi, Jiang, Chao, Chen, Ziyuan, He, Fangshu, Zhao, Yuyang, Jin, Yan, Huang, Luqi, Yuan, Yuan, Zhou, Chenfen, Xu, Qingwei, He, Sheng, Ye, Wei, Cao, Ruifang, Wang, Pengyu, Ling, Yunchao, Yan, Xing, Wang, Qingzhong, Du, Qiang, Zong, Wenting, Kang, Hongen, Xiong, Zhuang, Huan, Wendi, Zhang, Sirui, Xia, Qiguang, Fan, Xiaojuan, Wang, Zefeng, Chen, Xu, Chen, Tingting, Zhang, Sisi, Tang, Bixia, Dong, Lili, Zhang, Zhewen, Wang, Zhonghuang, Kang, Hailong, Wang, Yanqing, Wu, Song, Wang, Honggen, Chen, Ming, Liu, Chang, Xiong, Yujia, Shao, Xueying, Li, Yanyan, Zhou, Honghong, Chen, Xiaomin, Zheng, Yu, Kang, Quan, Hao, Di, Zhang, Lili, Luo, Huaxia, Hao, Yajing, Zhang, Peng, Nie, Zhi, Yu, Shuhuan, Yang, Fei, Sang, Jian, Li, Zhaohua, Zhang, Xiangquan, Zhou, Qing, Zhai, Shuang, Zhang, Yaping, Wang, Guodong, Zhu, Qianghui, Li, Xin, Li, Menghua, Yan, Jun, Li, Chen, Wang, Zhennan, Wang, Xiangfeng, Liu, Yuanming, Luo, Hong, Wu, Xiaoyuan, Jing, HaiChun, Song, Tinrui, Zhao, Yi, Mehmood, Furrukh, Ali, Shahid, Ali, Amjad, Saleem, Shoaib, Hussain, Irfan, Abbasi, Amir A, Zuo, Zhixiang, Ren, Jian, Zhang, Xinxin, Xiao, Yun, Li, Xia, Tu, Yiran, Xue, Yu, Wu, Wanying, Ji, Peifeng, Zhao, Fangqing, Meng, Xianwen, Peng, Di, Luo, Hao, Gao, Feng, Ning, Wanshan, Lin, Shaofeng, Liu, Teng, Guo, AnYuan, Yuan, Hao, Zhang, Yong E, Tan, Xiaodan, Zhang, Weizhi, Xie, Yubin, Wang, Chenwei, Liu, ChunJie, Yang, DeChang, Tian, Feng, Gao, Ge, Tang, Dachao, Yao, Lan, Cui, Qinghua, An, Ni A, Li, ChuanYun, Luo, XiaoTong. Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2021. Nucleic Acids Research[J]. 2021, 49(D1): D18-D28, http://dx.doi.org/10.1093/nar/gkaa1022.
[11] Mehmood, Furrukh, Abdullah, Ubaid, Zartasha, Bao, Yiming, Poczai, Peter, Mirza, Bushra. Comparative Plastomics of Ashwagandha (Withania, Solanaceae) and Identification of Mutational Hotspots for Barcoding Medicinal Plants. PLANTS-BASEL[J]. 2020, 9(6): https://www.webofscience.com/wos/woscc/full-record/WOS:000551097100001.
[12] Gong, Zheng, Zhu, JunWei, Li, CuiPing, Jiang, Shuai, Ma, LiNa, Tang, BiXia, Zou, Dong, Chen, MeiLi, Sun, YuBin, Song, ShuHui, Zhang, Zhang, Xiao, JingFa, Xue, YongBiao, Bao, YiMing, Du, ZhengLin, Zhao, WenMing. An online coronavirus analysis platform from the National Genomics Data Center. ZOOLOGICAL RESEARCHnull. 2020, 41(6): 705-708, http://lib.cqvip.com/Qikan/Article/Detail?id=7103487080.
[13] 段云峰, 王升跃, 陈禹保, 杨瑞馥, 李后开, 朱怀球, 童贻刚, 杜文斌, 付钰, 胡松年, 王军, 辛玉华, 赵方庆, 鲍一明, 张雯, 李娟, 曾明, 牛海涛, 周欣, 李岩, 崔生辉, 袁静, 李俊桦, 王加义, 刘东来, 倪铭, 孙青, 邓晔, 朱宝利. 微生物组测序与分析专家共识. 生物工程学报[J]. 2020, 36(12): 2516-2524, http://lib.cqvip.com/Qikan/Article/Detail?id=7103610501.
[14] Qi Liu, Shilei Zhao, ChengMin Shi, Shuhui Song, Sihui Zhu, Yankai Su, Wenming Zhao, Mingkun Li, Yiming Bao, Yongbiao Xue, Hua Chen, 陈华. Population Genetics of SARS-CoV-2: Disentangling Effects of Sampling Bias and Infection Clusters. Genomics, Proteomics & Bioinformatics[J]. 2020, [15] Hussain, Irfan, Pervaiz, Nashaiman, Khan, Abbas, Saleem, Shoaib, Shireen, Huma, Wei, DongQing, Labrie, Viviane, Bao, Yiming, Abbasi, Amir Ali. Evolutionary and structural analysis of SARS-CoV-2 specific evasion of host immunity. GENES AND IMMUNITY[J]. 2020, 21(6-8): 409-419, https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7711619/.
[16] Yonghong Liu, Hui Ding, Shuting Chang, Ran Lu, Hui Zhong, Na Zhao, TzuHsuan Lin, Yiming Bao, Liwei Yap, Weijia Xu, Minyi Wang, Yuan Li, Shuwen Qin, Yu Zhao, Xingyi Geng, Supen Wang, Enfu Chen, Zhi Yu, TaChien Chan, Shelan Liu. Exposure to air pollution and scarlet fever resurgence in China: a six-year surveillance study. NATURE COMMUNICATIONS[J]. 2020, 11(1): http://dx.doi.org/10.1038/s41467-020-17987-8.
[17] 赵文明, 宋述慧, 陈梅丽, 邹东, 马利娜, 马英克, 李茹姣, 郝丽丽, 李翠萍, 田东梅, 唐碧霞, 王彦青, 朱军伟, 陈焕新, 章张, 薛勇彪, 鲍一明. 2019新型冠状病毒信息库. 遗传[J]. 2020, 42(2): 212-221, http://lib.cqvip.com/Qikan/Article/Detail?id=7100926823.
[18] Zhang, Zhang, Song, Shuhui, Yu, Jun, Zhao, Wenming, Xiao, Jingfa, Bao, Yiming. The Elements of Data Sharing. GENOMICS PROTEOMICS & BIOINFORMATICS[J]. 2020, 18(1): 1-4, http://lib.cqvip.com/Qikan/Article/Detail?id=00002HUHLL7G7JP0MPDO8JP1MNR.
[19] Zhang, Zhang, Zhao, Wenming, Xiao, Jingfa, Bao, Yiming, He, Shunmin, Zhang, Guoqing, Li, Yixue, Zhao, Guoping, Chen, Runsheng, Gao, Yang, Zhang, Chao, Yuan, Liyun, Xu, Shuhua, Ning, Zhilin, Lu, Yan, Zeng, Jingyao, Yuan, Na, Zhu, Junwei, Pan, Mengyu, Zhang, Hao, Wang, Qi, Shi, Shuo, Jiang, Meiye, Lu, Mingming, Qian, Qiheng, Gao, Qianwen, Shang, Yunfei, Wang, Jinyue, Du, Zhenglin, Tian, Dongmei, Wang, Pei, Tang, Bixia, Li, Cuiping, Teng, Xufei, Liu, Xiaonan, Zou, Dong, Song, Shuhui, Xiong, Zhuang, Li, Mengwei, Yang, Fei, Ma, Yingke, Sang, Jian, Li, Zhaohua, Li, Rujiao, Wang, Zhonghuang, Zhu, Qianghui, Li, Xin, Zhang, Sisi, Kang, Hailong, Dong, Lili, Ying, Cui, Duan, Guangya, Li, Menghua, Zhi, Xiaoyang, Ling, Yunchao, Cao, Ruifang, Jiang, Zhao, Zhou, Haokui, Lv, Daqing, Liu, Wan, Klenk, HansPeter, Zhang, Yadong, Zhang, Zhewen, Chen, Tingting, Chen, Xu, Wang, Yanqing, Wu, Song, Gong, Zheng, Chen, Meili, Fang, Shuangsang, Zhang, Lili, Guo, Jincheng, Niu, Yiwei, Wu, Yang, Li, Hui, Zhao, Lianhe, Li, Xiyuan, Teng, Xueyi, Sun, Xianhui, Sun, Liang, Zhao, Yi, Wang, Jiajia, Zhang, Peng, Li, Yanyan, Zheng, Yu, Chen, Xiaomin, Xue, Hua, Teng, Yiheng, Kang, Quan, Hao, Yajing, Cao, Jiabao, Liu, Lin, Li, Zhao, Li, Qianpeng, Du, Qiang, Abbasi, Amir A, Shireen, Huma, Pervaiz, Nashaiman, Batool, Fatima, Raza, Rabail Z, Ma, Lina, Niu, Guangyi, Zhang, Yuansheng, Zhu, Tongtong, Hao, Lili, Wang, Guoliang, Yan, Jun, Li, Chen, Wang, Zhennan, Wang, Xiangfeng, Li, Zhonghai, Zhang, Yang, Wang, Houling, Zhang, Yi, Xia, Xinli, Guo, Hongwei, Zhu, Junwen, Zhou, Qing, Kang, Hongen, Lan, Li, Zhang, Xin, Xue, Yongbiao, Sun, Yubin, Zhai, Shuang, Yu, Lei, Sun, Mingyuan, Chen, Huanxin, Hu, Hui, Guo, AnYuan, Lin, Shaofeng, Xue, Yu, Wang, Chenwei, Ning, Wanshan, Zhang, Xinxin, Xiao, Yun, Li, Xia, Tu, Yiran, Wu, Wanying, Ji, Peifeng, Zhao, Fangqing, Luo, Hao, Gao, Feng, Guo, Yaping, Yuan, Hao, Zhang, Yong E, Zhang, Qiong, Zhou, Jiaqi, Huang, Zhou, Cui, Qinghua, Miao, YaRu, Ruan, Chen, Yuan, Chunhui, Chen, Ming, Jin, JinPu, Tian, Feng, Gao, Ge, Shi, Ying, Yao, Lan, Li, Xiangshang, Li, ChuanYun, Tang, Qing, Peng, Di. Database Resources of the National Genomics Data Center in 2020. NUCLEIC ACIDS RESEARCH[J]. 2020, 48(D1): D24-D33, https://www.webofscience.com/wos/woscc/full-record/WOS:000525956700004.
[20] Muhammad Saqib Nawaz, Razia Asghar, Nashaiman Pervaiz, Shahid Ali, Irfan Hussain, Peiqi Xing, Yiming Bao, Amir Ali Abbasi. Molecular evolutionary and structural analysis of human UCHL1 gene demonstrates the relevant role of intragenic epistasis in Parkinson's disease and other neurological disorders. BMC EVOLUTIONARY BIOLOGY[J]. 2020, 20(1): http://dx.doi.org/10.1186/s12862-020-01684-7.
[21] Shah, Syed Hamid Jalal, Malik, Aamir Humayun, Zhang, Bing, Bao, Yiming, Qazi, Javaria. Metagenomic analysis of relative abundance and diversity of bacterial microbiota in Bemisia tabaci infesting cotton crop in Pakistan. INFECTION GENETICS AND EVOLUTION[J]. 2020, 84: http://dx.doi.org/10.1016/j.meegid.2020.104381.
[22] Xiong, Zhuang, Li, Mengwei, Yang, Fei, Ma, Yingke, Sang, Jian, Li, Rujiao, Li, Zhaohua, Zhang, Zhang, Bao, Yiming. EWAS Data Hub: a resource of DNA methylation array data and metadata. NUCLEIC ACIDS RESEARCH[J]. 2020, 48(D1): D890-D895, https://www.webofscience.com/wos/woscc/full-record/WOS:000525956700116.
[23] Song, Shuhui, Ma, Lina, Zou, Dong, Tian, Dongmei, Li, Cuiping, Zhu, Junwei, Chen, Meili, Wang, Anke, Ma, Yingke, Li, Mengwei, Teng, Xufei, Cui, Ying, Duan, Guangya, Zhang, Mochen, Jin, Tong, Shi, Chengmin, Du, Zhenglin, Zhang, Yadong, Liu, Chuandong, Li, Rujiao, Zeng, Jingyao, Hao, Lili, Jiang, Shuai, Chen, Hua, Han, Dali, Xiao, Jingfa, Zhang, Zhang, Zhao, Wenming, Xue, Yongbiao, Bao, Yiming. The Global Landscape of SARS-CoV-2 Genomes, Variants, and Haplotypes in 2019nCoVR. GENOMICS PROTEOMICS & BIOINFORMATICS[J]. 2020, 18(6): 749-759, http://dx.doi.org/10.1016/j.gpb.2020.09.001.
[24] Stephen T Garnett, Les Christidis, Stijn Conix, Mark J Costello, Frank E Zachos, Olaf S Bnki, Yiming Bao, Saroj K Barik, John S Buckeridge, Donald Hobern, Aaron Lien, Narelle Montgomery, Svetlana Nikolaeva, Richard L Pyle, Scott A Thomson, Peter Paul van Dijk, Anthony Whalen, ZhiQiang Zhang, Kevin R Thiele. Principles for creating a single authoritative list of the world's species.. PLoS Biology[J]. 2020, 18(7): https://doaj.org/article/e5b4ab3a92a74ae7a0d9d759dcda8167.
[25] Pei, Shaojun, Dong, Rui, Bao, Yiming, He, Rong Lucy, Yau, Stephen ST. Classification of genomic components and prediction of genes of Begomovirus based on subsequence natural vector and support vector machine. PEERJ[J]. 2020, 8: https://doaj.org/article/f5d08b5d082e4bed8830154c15253327.
[26] 陈梅丽, 马英克, 李茹姣, 鲍一明. 基因组学数据分析方法现状和展望. 数据与计算发展前沿. 2020, 2(2): 1-19, http://lib.cqvip.com/Qikan/Article/Detail?id=7102179179.
[27] Tang, Bixia, Zhou, Qing, Dong, Lili, Li, Wulue, Zhang, Xiangquan, Lan, Li, Zhai, Shuang, Xiao, Jingfa, Zhang, Zhang, Bao, Yiming, Zhang, YaPing, Wang, GuoDong, Zhao, Wenming. iDog: an integrated resource for domestic dogs and wild canids. NUCLEIC ACIDS RESEARCH[J]. 2019, 47(D1): D793-D800, http://dx.doi.org/10.1093/nar/gky1041.
[28] Zhao, Yongbing, Wang, Jinyue, Liang, Fang, Liu, Yanxia, Wang, Qi, Zhang, Hao, Jiang, Meiye, Zhang, Zhewen, Zhao, Wenming, Bao, Yiming, Zhang, Zhang, Wu, Jiayan, Asmann, Yan W, Li, Rujiao, Xiao, Jingfa. NucMap: a database of genome-wide nucleosome positioning map across species. NUCLEIC ACIDS RESEARCH[J]. 2019, 47(D1): D163-D169, https://www.webofscience.com/wos/woscc/full-record/WOS:000462587400027.
[29] Nashaiman Pervaiz, Nazia Shakeel, Ayesha Qasim, Rabail Zehra, Saneela Anwar, Neenish Rana, Yongbiao Xue, Zhang Zhang, Yiming Bao, Amir Ali Abbasi. Evolutionary history of the human multigene families reveals widespread gene duplications throughout the history of animals. BMC EVOLUTIONARY BIOLOGY[J]. 2019, 19(1): https://doaj.org/article/27059cd805af419db832ec93fc746898.
[30] Amarasinghe, Gaya K, Ayllon, Maria A, Bao, Yiming, Basler, Christopher F, Bavari, Sina, Blasdell, Kim R, Briese, Thomas, Brown, Paul A, Bukreyev, Alexander, BalkemaBuschmann, Anne, Buchholz, Ursula J, ChabiJesus, Camila, Chandran, Kartik, Chiapponi, Chiara, Crozier, Ian, de Swart, Rik L, Dietzgen, Ralf G, Dolnik, Olga, Drexler, Jan F, Duerrwald, Ralf, Dundon, William G, Duprex, W Paul, Dye, John M, Easton, Andrew J, Fooks, Anthony R, Formenty, Pierre B H, Fouchier, Ron A M, FreitasAstua, Juliana, Griffiths, Anthony, Hewson, Roger, Horie, Masayuki, Hyndman, Timothy H, Jiang, Daohong, Kitajima, Elliott W, Kobinger, Gary P, Kondo, Hideki, Kurath, Gael, Kuzmin, Ivan V, Lamb, Robert A, Lavazza, Antonio, Lee, Benhur, Lelli, Davide, Leroy, Eric M, Li, Jianrong, Maes, Piet, Marzano, ShinYi L, Moreno, Ana, Muhlberger, Elke, Netesov, Sergey V, Nowotny, Norbert, Nylund, Are, Okland, Arnfinn L, Palacios, Gustavo, Palyi, Bernadett, Paweska, Janusz T, Payne, Susan L, Prosperi, Alice, RamosGonzalez, Pedro Luis, Rima, Bertus K, Rota, Paul, Rubbenstroth, Dennis, Shi, Mang, Simmonds, Peter, Smither, Sophie J, Sozzi, Enrica, Spann, Kirsten, Stenglein, Mark D, Stone, David M, Takada, Ayato, Tesh, Robert B, Tomonaga, Keizo, Tordo, Noel, Towner, Jonathan S, van den Hoogen, Bernadette, Vasilakis, Nikos, Wahl, Victoria, Walker, Peter J, Wang, LinFa, Whitfield, Anna E, Williams, John V, Zerbini, F Murilo, Zhang, Tao, Zhang, YongZhen, Kuhn, Jens H. Taxonomy of the order Mononegavirales: update 2019. ARCHIVES OF VIROLOGY[J]. 2019, 164(7): 1967-1980, http://dx.doi.org/10.1007/s00705-019-04247-4.
[31] Wang, Guangyu, Yin, Hongyan, Li, Boyang, Yu, Chunlei, Wang, Fan, Xu, Xingjian, Cao, Jiabao, Bao, Yiming, Wang, Liguo, Abbasi, Amir A, Bajic, Vladimir B, Ma, Lina, Zhang, Zhang. Characterization and identification of long non-coding RNAs based on feature relationship. BIOINFORMATICS[J]. 2019, 35(17): 2949-2956, https://www.webofscience.com/wos/woscc/full-record/WOS:000487323400009.
[32] Suman Seemab, Nashaiman Pervaiz, Rabail Zehra, Saneela Anwar, Yiming Bao, Amir Ali Abbasi. Molecular evolutionary and structural analysis of familial exudative vitreoretinopathy associated FZD4 gene. BMC Evolutionary Biology[J]. 2019, 19(1): 1-10, https://doaj.org/article/02c94dbd1fbd4785bc77abbeed166d3c.
[33] Li, Mengwei, Zou, Dong, Li, Zhaohua, Gao, Ran, Sang, Jian, Zhang, Yuansheng, Li, Rujiao, Xia, Lin, Zhang, Tao, Niu, Guangyi, Bao, Yiming, Zhang, Zhang. EWAS Atlas: a curated knowledgebase of epigenome-wide association studies. NUCLEIC ACIDS RESEARCH[J]. 2019, 47(D1): D983-D988, [34] Zhang, Zhang, Zhao, Wenming, Xiao, Jingfa, Bao, Yiming, Wang, Fan, Hao, Lili, Zhu, Junwei, Chen, Tingting, Zhang, Sisi, Chen, Xu, Tang, Bixia, Zhou, Qing, Wang, Zhonghuang, Dong, Lili, Wang, Yanqing, Ma, Yingke, Zhang, Zhewen, Wang, Zhonghuang, Chen, Meili, Tian, Dongmei, Li, Cuiping, Teng, Xufei, Du, Zhenglin, Yuan, Na, Zeng, Jingyao, Wang, Jinyue, Shi, Shuo, Zhang, Yadong, Wang, Qi, Pan, Mengyu, Qian, Qiheng, Song, Shuhui, Niu, Guangyi, Li, Man, Xia, Lin, Zou, Dong, Zhang, Yuansheng, Sang, Jian, Li, Mengwei, Zhang, Yang, Wang, Pei, Gao, Qianwen, Liang, Fang, Li, Rujiao, Liu, Lin, Cao, Jiabao, abbasi, Amir A, Shireen, Huma, Li, Zhao, Xiong, Zhuang, Jiang, Meiye, Guo, Tongkun, Li, Zhaohua, Zhang, Hao, Ma, Lina, Gao, Ran, Zhang, Tao, Li, Wulue, Zhang, Xiangquan, Lan, Li, Zhai, Shuang, Zhang, Yaping, Wang, Guodong, Wang, Zhennan, Xue, Yongbiao, Sun, Yubin, Yu, Lei, Sun, Mingyuan, Chen, Huanxin, Hu, Hui, Guo, AnYuan, Lin, Shaofeng, Xue, Yu, Wang, Chenwei, Ning, Wanshan, Zhang, Ying, Luo, Hao, Gao, Feng, Guo, Yaping, Zhang, Qiong, Zhou, Jiaqi, Huang, Zhou, Cui, Qinghua, Miao, YaRu, Ruan, Chen, Yuan, Chunhui, Chen, Ming, Jinpu, Jin, Gao, Ge, Xu, Haodong, Li, Yumei, Li, ChuanYun, Tang, Qing, Peng, Di, Deng, Wankun, Big Data Ctr Members. Database Resources of the BIG Data Center in 2019. NUCLEIC ACIDS RESEARCH[J]. 2019, 47(D1): D8-D14, http://dx.doi.org/10.1093/nar/gky993.
[35] Sang, Jian, Wang, Zhennan, Li, Man, Cao, Jiabao, Niu, Guangyi, Xia, Lin, Zou, Dong, Wang, Fan, Xu, Xingjian, Han, Xiaojiao, Fan, Jinqi, Yang, Ye, Zuo, Wanzhu, Zhang, Yang, Zhao, Wenming, Bao, Yiming, Xiao, Jingfa, Hu, Songnian, Hao, Lili, Zhang, Zhang. ICG: a wiki-driven knowledgebase of internal control genes for RT-qPCR normalization. NUCLEIC ACIDS RESEARCH[J]. 2018, 46(D1): D121-D126, https://www.webofscience.com/wos/woscc/full-record/WOS:000419550700019.
[36] Bao Yiming. NCBI will no longer make taxonomy identifiers for individual influenza strains on January 15, 2018. PeerJ Preprints. 2018, [37] Pavesi, Angelo, Vianelli, Alberto, Chirico, Nicola, Bao, Yiming, Blinkova, Olga, Belshaw, Robert, Firth, Andrew, Karlin, David. Overlapping genes and the proteins they encode differ significantly in their sequence composition from non-overlapping genes.. PLoS ONE[J]. 2018, 13(10): https://doaj.org/article/306c00f1fee64e71a068b82beb1dcfbf.
[38] Bao Yiming. Prospects for national biological big data centers. 遗传. 2018, [39] Maes, Piet, Alkhovsky, Sergey V, Bao, Yiming, Beer, Martin, Birkhead, Monica, Briese, Thomas, Buchmeier, Michael J, Calisher, Charles H, Charrel, Remi N, Choi, Il Ryong, Clegg, Christopher S, de la Torre, Juan Carlos, Delwart, Eric, DeRisi, Joseph L, Di Bello, Patrick L, Di Serio, Francesco, Digiaro, Michele, Dolja, Valerian V, Drosten, Christian, Druciarek, Tobiasz Z, Du, Jiang, Ebihara, Hideki, Elbeaino, Toufic, Gergerich, Rose C, Gillis, Amethyst N, Gonzalez, JeanPaul J, Haenni, AnneLise, Hepojoki, Jussi, Hetzel, Udo, Thien Ho, Ni Hong, Jain, Rakesh K, van Vuren, Petrus Jansen, Jin, Qi, Jonson, Miranda Gilda, Junglen, Sandra, Keller, Karen E, Kemp, Alan, Kipar, Anja, Kondov, Nikola O, Koonin, Eugene V, Kormelink, Richard, Korzyukov, Yegor, Krupovic, Mart, Lambert, Amy J, Laney, Alma G, LeBreton, Matthew, Lukashevich, Igor S, Marklewitz, Marco, Markotter, Wanda, Martelli, Giovanni P, Martin, Robert R, MielkeEhret, Nicole, Muehlbach, HansPeter, Navarro, Beatriz, Ng, Terry Fei Fan, Teixeira Nunes, Marcio Roberto, Palacios, Gustavo, Paweska, Janusz T, Peters, Clarence J, Plyusnin, Alexander, Radoshitzky, Sheli R, Romanowski, Victor, Salmenpera, Pertteli, Salvato, Maria S, Sanfacon, Helene, Sasaya, Takahide, Schmaljohn, Connie, Schneider, Bradley S, Shirako, Yukio, Siddell, Stuart, Sironen, Tarja A, Stenglein, Mark D, Storm, Nadia, Sudini, Harikishan, Tesh, Robert B, Tzanetakis, Ioannis E, Uppala, Mangala, Vapalahti, Olli, Vasilakis, Nikos, Walker, Peter J, Wang, Guoping, Wang, Liping, Wang, Yanxiang, Wei, Taiyun, Wiley, Michael R, Wolf, Yuri I, Wolfe, Nathan D, Wu, Zhiqiang, Xu, Wenxing, Yang, Li, Yang, Zuokun, Yeh, ShyiDong, Zhang, YongZhen, Zheng, Yazhou, Zhou, Xueping, Zhu, Chenxi, Zirkel, Florian, Kuhn, Jens H. Taxonomy of the family Arenaviridae and the order Bunyavirales: update 2018. ARCHIVES OF VIROLOGY[J]. 2018, 163(8): 2295-2310, https://www.webofscience.com/wos/woscc/full-record/WOS:000440727000037.
[40] Li, Rujiao, Liang, Fang, Li, Mengwei, Zou, Dong, Sun, Shixiang, Zhao, Yongbing, Zhao, Wenming, Bao, Yiming, Xiao, Jingfa, Zhang, Zhang. MethBank 3.0: a database of DNA methylomes across a variety of species. NUCLEIC ACIDS RESEARCH[J]. 2018, 46(D1): D288-D295, https://www.webofscience.com/wos/woscc/full-record/WOS:000419550700044.
[41] Bao Yiming. Preliminary Classification of Novel Hemorrhagic Fever-Causing Viruses Using Sequence-Based PAirwise Sequence Comparison (PASC) Analysis. Methods Mol Biol. 2018, [42] Bao Yiming. Current Status and Prospect of Life and Health Big Data. Bulletin of the Chinese Academy of Sciences. 2018, [43] 鲍一明, 薛勇彪. 生命与健康大数据现状和展望. 中国科学院院刊[J]. 2018, 33(8): 861-865, http://lib.cqvip.com/Qikan/Article/Detail?id=676185375.
[44] Xu, Xingjian, Hao, Lili, Zhu, Junwei, Zhou, Qing, Song, Fuhai, Chen, Tingting, Zhang, Sisi, Dong, Lili, Lan, Li, Wang, Yanqing, Liang, Fang, Cao, Jiabao, Liu, Fang, Liu, Lin, Wang, Fan, Ma, Yingke, Zhang, Lijuan, Chen, Meili, Tian, Dongmei, Li, Cuiping, Du, Zhenglin, Yuan, Na, Zeng, Jingyao, Zhang, Zhewen, Wang, Jinyue, Shi, Shuo, Zhang, Yadong, Pan, Mengyu, Tang, Bixia, Zou, Dong, Song, Shuhui, Sang, Jian, Xia, Lin, Wang, Zhennan, Li, Man, Niu, Guangyi, Zhang, Yang, Sheng, Xin, Lu, Mingming, Wang, Qi, Liang, Fang, Li, Mengwei, Sun, Shixiang, Li, Rujiao, Yu, Chunlei, Wang, Guangyu, Li, Man, Yin, Hongyan, Ma, Lina, Chen, Huanxin, Sun, Yubin, Yu, Lei, Zhai, Shuang, Sun, Mingyuan, Zhang, Zhang, Zhao, Wenming, Xiao, Jingfa, Bao, Yiming, Song, Shuhui, Miao, YaRu, Guo, AnYuan, Lin, Shaofeng, Xue, Yu, Luo, Hao, Gao, Feng, Ma, Wei, Cui, Qinghua, Xu, Haodong, BIG Data Ctr, BioCode Team, BioProject BioSample GSA Team, GWH Team, GVM Team, GEN Team, MethBank Team, Science Wikis Team, Hardware System Administration, Writing Grp, AnimalTFDB lncRNASNP Team, dbPAF Team, DEG DoriC Team, LncRNADis Team, PLMD Team. Database Resources of the BIG Data Center in 2018. NUCLEIC ACIDS RESEARCH[J]. 2018, 46(D1): D14-D20, http://dx.doi.org/10.1093/nar/gkx897.
[45] Song, Shuhui, Tian, Dongmei, Li, Cuiping, Tang, Bixia, Dong, Lili, Xiao, Jingfa, Bao, Yiming, Zhao, Wenming, He, Hang, Zhang, Zhang. Genome Variation Map: a data repository of genome variations in BIG Data Center. NUCLEIC ACIDS RESEARCH[J]. 2018, 46(D1): D944-D949, http://dx.doi.org/10.1093/nar/gkx986.
[46] 马英克, 鲍一明. 国家级生物大数据中心展望. 遗传[J]. 2018, 40(11): 938-943, http://lib.cqvip.com/Qikan/Article/Detail?id=7000931353.
[47] Amarasinghe, Gaya K, Bao, Yiming, Basler, Christopher F, Bavari, Sina, Beer, Martin, Bejerman, Nicolas, Blasdell, Kim R, Bochnowski, Alisa, Briese, Thomas, Bukreyev, Alexander, Calisher, Charles H, Chandran, Kartik, Collins, Peter L, Dietzgen, Ralf G, Dolnik, Olga, Duerrwald, Ralf, Dye, John M, Easton, Andrew J, Ebihara, Hideki, Fang, Qi, Formenty, Pierre, Fouchier, Ron A M, Ghedin, Elodie, Harding, Robert M, Hewson, Roger, Higgins, Colleen M, Hong, Jian, Horie, Masayuki, James, Anthony P, JiAng, Daohong, Kobinger, Gary P, Kondo, Hideki, Kurath, Gael, Lamb, Robert A, Lee, Benhur, Leroy, Eric M, Li, Ming, Maisner, Andrea, Muhlberger, Elke, Netesov, Sergey V, Nowotny, Norbert, Patterson, Jean L, Payne, Susan L, Paweska, Janusz T, Pearson, Michael N, Randall, Rick E, Revill, Peter A, Rima, Bertus K, Rota, Paul, Rubbenstroth, Dennis, Schwemmle, Martin, Smither, Sophie J, Song, Qisheng, Stone, David M, Takada, Ayato, Terregino, Calogero, Tesh, Robert B, Tomonaga, Keizo, Tordo, Noel, Towner, Jonathan S, Vasilakis, Nikos, Volchkov, Viktor E, WahlJensen, Victoria, Walker, Peter J, Wang, Beibei, Wang, David, Wang, Fei, Wang, LinFa, Werren, John H, Whitfield, Anna E, Yan, Zhichao, Ye, Gongyin, Kuhn, Jens H. Taxonomy of the order Mononegavirales: update 2017. ARCHIVES OF VIROLOGY[J]. 2017, 162(8): 2493-2504, https://www.webofscience.com/wos/woscc/full-record/WOS:000405497700046.
[48] Bao, Yiming, Amarasinghe, Gaya K, Basler, Christopher F, Bavari, Sina, Bukreyev, Alexander, Chandran, Kartik, Dolnik, Olga, Dye, John M, Ebihara, Hideki, Formenty, Pierre, Hewson, Roger, Kobinger, Gary P, Leroy, Eric M, Muhlberger, Elke, Netesov, Sergey V, Patterson, Jean L, Paweska, Janusz T, Smither, Sophie J, Takada, Ayato, Towner, Jonathan S, Volchkov, Viktor E, WahlJensen, Victoria, Kuhn, Jens H. Implementation of Objective PASC-Derived Taxon Demarcation Criteria for Official Classification of Filoviruses. VIRUSES-BASEL[J]. 2017, 9(5): https://doaj.org/article/f40d2b0814514f12b6108274168157ff.
[49] Hatcher, Eneida L, Zhdanov, Sergey A, Bao, Yiming, Blinkova, Olga, Nawrocki, Eric P, Ostapchuck, Yuri, Schaffer, Alejandro A, Brister, J Rodney. Virus Variation Resource - improved response to emergent viral outbreaks. NUCLEIC ACIDS RESEARCH[J]. 2017, 45(D1): D482-D490, https://www.webofscience.com/wos/woscc/full-record/WOS:000396575500069.
[50] Jian Hong, John H Werren, Qisheng Song, Jens H Kuhn, Yiming Bao, Beibei Wang, Qi Fang, Zhichao Yan, Fei Wang, Gongyin Ye. A novel negative-stranded RNA virus mediates sex ratio in its parasitoid host. Public Library of Science. 2017, http://oa.las.ac.cn/oainone/service/browseall/read1?ptype=JA&workid=JA201902016828283ZK.
[51] Kuhn, Jens H, Lauck, Michael, Bailey, Adam L, Shchetinin, Alexey M, Vishnevskaya, Tatyana V, Bao, Yiming, Ng, Terry Fei Fan, LeBreton, Matthew, Schneider, Bradley S, Gillis, Amethyst, Tamoufe, Ubald, Diffo, Joseph Le Doux, Takuo, Jean Michel, Kondov, Nikola O, Coffey, Lark L, Wolfe, Nathan D, Delwart, Eric, Clawson, Anna N, Postnikova, Elena, Bollinger, Laura, Lackemeyer, Matthew G, Radoshitzky, Sheli R, Palacios, Gustavo, Wada, Jiro, Shevtsova, Zinaida V, Jahrling, Peter B, Lapin, Boris A, Deriabin, Petr G, Dunowska, Magdalena, Alkhovsky, Sergey V, Rogers, Jeffrey, Friedrich, Thomas C, OConnor, David H, Goldberg, Tony L. Reorganization and expansion of the nidoviral family Arteriviridae. ARCHIVES OF VIROLOGY[J]. 2016, 161(3): 755-768, http://dx.doi.org/10.1007/s00705-015-2672-z.
[52] Jens H Kuhn, Michael R Wiley, Sergio E Rodriguez, Ymng Bo, Karla Prieto, Amelia P A Travassos da Rosa, Hilda Guzman, Nazir Savji, Jason T Ladner, Robert B Tesh, Jiro Wada, Peter B Jahrling, Dennis A Bente, Gustavo Palacios, Jane Tao, PierreYves Lozach. Genomic Characterization of the Genus Nairovirus (Family Bunyaviridae ). Viruses[J]. 2016, 8(6): https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4926184/.
[53] OLeary, Nuala A, Wright, Mathew W, Brister, J Rodney, Ciufo, Stacy, McVeigh, Diana Haddad Rich, Rajput, Bhanu, Robbertse, Barbara, SmithWhite, Brian, AkoAdjei, Danso, Astashyn, Alexander, Badretdin, Azat, Bao, Yiming, Blinkova, Olga, Brover, Vyacheslav, Chetvernin, Vyacheslav, Choi, Jinna, Cox, Eric, Ermolaeva, Olga, Farrell, Catherine M, Goldfarb, Tamara, Gupta, Tripti, Haft, Daniel, Hatcher, Eneida, Hlavina, Wratko, Joardar, Vinita S, Kodali, Vamsi K, Li, Wenjun, Maglott, Donna, Masterson, Patrick, McGarvey, Kelly M, Murphy, Michael R, ONeill, Kathleen, Pujar, Shashikant, Rangwala, Sanjida H, Rausch, Daniel, Riddick, Lillian D, Schoch, Conrad, Shkeda, Andrei, Storz, Susan S, Sun, Hanzhen, ThibaudNissen, Francoise, Tolstoy, Igor, Tully, Raymond E, Vatsan, Anjana R, Wallin, Craig, Webb, David, Wu, Wendy, Landrum, Melissa J, Kimchi, Avi, Tatusova, Tatiana, DiCuccio, Michael, Kitts, Paul, Murphy, Terence D, Pruitt, Kim D. Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation. NUCLEIC ACIDS RESEARCH[J]. 2016, 44(D1): D733-D745, http://dx.doi.org/10.1093/nar/gkv1189.
[54] Afonso, Claudio L, Amarasinghe, Gaya K, Banyai, Krisztian, Bao, Yiming, Basler, Christopher F, Bavari, Sina, Bejerman, Nicolas, Blasdell, Kim R, Briand, FrancoisXavier, Briese, Thomas, Bukreyev, Alexander, Calisher, Charles H, Chandran, Kartik, Cheng, Jiasen, Clawson, Anna N, Collins, Peter L, Dietzgen, Ralf G, Dolnik, Olga, Domier, Leslie L, Duerrwald, Ralf, Dye, John M, Easton, Andrew J, Ebihara, Hideki, Farkas, Szilvia L, FreitasAstua, Juliana, Formenty, Pierre, Fouchier, Ron A M, Fu, Yanping, Ghedin, Elodie, Goodin, Michael M, Hewson, Roger, Horie, Masayuki, Hyndman, Timothy H, Jiang, Daohong, Kitajima, Elliot W, Kobinger, Gary P, Kondo, Hideki, Kurath, Gael, Lamb, Robert A, Lenardon, Sergio, Leroy, Eric M, Li, CiXiu, Lin, XianDan, Liu, Lijiang, Longdon, Ben, Marton, Szilvia, Maisner, Andrea, Muhlberger, Elke, Netesov, Sergey V, Nowotny, Norbert, Patterson, Jean L, Payne, Susan L, Paweska, Janusz T, Randall, Rick E, Rima, Bertus K, Rota, Paul, Rubbenstroth, Dennis, Schwemmle, Martin, Shi, Mang, Smither, Sophie J, Stenglein, Mark D, Stone, David M, Takada, Ayato, Terregino, Calogero, Tesh, Robert B, Tian, JunHua, Tomonaga, Keizo, Tordo, Noel, Towner, Jonathan S, Vasilakis, Nikos, Verbeek, Martin, Volchkov, Viktor E, WahlJensen, Victoria, Walsh, John A, Walker, Peter J, Wang, David, Wang, LinFa, Wetzel, Thierry, Whitfield, Anna E, Xie, Jiatao, Yuen, KwokYung, Zhang, YongZhen, Kuhn, Jens H. Taxonomy of the order Mononegavirales: update 2016. ARCHIVES OF VIROLOGY[J]. 2016, 161(8): 2351-2360, https://www.webofscience.com/wos/woscc/full-record/WOS:000380135100037.
[55] Radoshitzky, Sheli R, Bao, Yimng, Buchmeier, Michael J, Charrel, Remi N, Clawson, Anna N, Clegg, Christopher S, DeRisi, Joseph L, Emonet, Sebastien, Gonzalez, JeanPaul, Kuhn, Jens H, Lukashevich, Igor S, Peters, Clarence J, Romanowski, Victor, Salvato, Maria S, Stenglein, Mark D, de la Torre, Juan Carlos. Past, present, and future of arenavirus taxonomy. ARCHIVES OF VIROLOGY[J]. 2015, 160(7): 1851-1874, http://dx.doi.org/10.1007/s00705-015-2418-y.
[56] Lauck, Michael, Alkhovsky, Sergey V, Bao, Yiming, Bailey, Adam L, Shevtsova, Zinaida V, Shchetinin, Alexey M, Vishnevskaya, Tatyana V, Lackemeyer, Matthew G, Postnikova, Elena, Mazur, Steven, Wada, Jiro, Radoshitzky, Sheli R, Friedrich, Thomas C, Lapin, Boris A, Deriabin, Petr G, Jahrling, Peter B, Goldberg, Tony L, OConnor, David H, Kuhn, Jens H. Historical Outbreaks of Simian Hemorrhagic Fever in Captive Macaques Were Caused by Distinct Arteriviruses. JOURNAL OF VIROLOGY[J]. 2015, 89(15): 8082-8087, https://www.webofscience.com/wos/woscc/full-record/WOS:000358277800052.
[57] Brister, J Rodney, Akoadjei, Danso, Bao, Yiming, Blinkova, Olga. NCBI Viral Genomes Resource. NUCLEIC ACIDS RESEARCH[J]. 2015, 43(D1): D571-D577, http://dx.doi.org/10.1093/nar/gku1207.
[58] Kuhn, Jens H, Duerrwald, Ralf, Bao, Yiming, Briese, Thomas, Carbone, Kathryn, Clawson, Anna N, deRisi, Joseph L, Garten, Wolfgang, Jahrling, Peter B, Kolodziejek, Jolanta, Rubbenstroth, Dennis, Schwemmle, Martin, Stenglein, Mark, Tomonaga, Keizo, Weissenboeck, Herbert, Nowotny, Norbert. Taxonomic reorganization of the family Bornaviridae. ARCHIVES OF VIROLOGY[J]. 2015, 160(2): 621-632, http://dx.doi.org/10.1007/s00705-014-2276-z.
[59] Bao, Yiming, Chetvernin, Vyacheslav, Tatusova, Tatiana. Improvements to pairwise sequence comparison (PASC): a genome-based web tool for virus classification. ARCHIVES OF VIROLOGY[J]. 2014, 159(12): 3293-3304, http://dx.doi.org/10.1007/s00705-014-2197-x.
[60] Jens H Kuhn, Kristian G Andersen, Ymng Bo, Sina Bavari, Stephan Becker, Richard S Bennett, Nicholas H Bergman, Olga Blinkova, Steven Bradfute, J Rodney Brister, Alexander Bukreyev, Kartik Chandran, Alexander A Chepurnov, Robert A Davey, Ralf G Dietzgen, Norman A Doggett, Olga Dolnik, John M Dye, Sven Enterlein, Paul W Fenimore, Pierre Formenty, Alexander N Freiberg, Robert F Garry, Nicole L Garza, Stephen K Gire, JeanPaul Gonzalez, Anthony Griffiths, Christian T Happi, Lisa E Hensley, Andrew S Herbert, Michael C Hevey, Thomas Hoenen, Anna N Honko, Georgy M Ignatyev, Peter B Jahrling, Joshua C Johnson, Karl M Johnson, Jason Kindrachuk, HansDieter Klenk, Gary Kobinger, Tadeusz J Kochel, Matthew G Lackemeyer, Daniel F Lackner, Eric M Leroy, Mark S Lever, Elke Mhlberger, Sergey V Netesov, Gene G Olinger, Sunday A Omilabu, Gustavo Palacios, Rekha G Panchal, Daniel J Park, Jean L Patterson, Janusz T Paweska, Clarence J Peters, James Pettitt, Louise Pitt, Sheli R Radoshitzky, Elena I Ryabchikova, Erica Ollmann Saphire, Pardis C Sabeti, Rachel Sealfon, Aleksandr M Shestopalov, Sophie J Smither, Nancy J Sullivan, Robert Swanepoel, Ayato Takada, Jonathan S Towner, Guido van der Groen, Viktor E Volchkov, Valentina A Volchkova, Victoria WahlJensen, Travis K Warren, Kelly L Warfield, Manfred Weidmann, Stuart T Nichol. Filovirus RefSeq Entries: Evaluation and Selection of Filovirus Type Variants, Type Sequences, and Names. Viruses[J]. 2014, 6(9): 3663-3682, https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4189044/.
[61] Kuhn, Jens H, Bao, Yiming, Bavari, Sina, Becker, Stephan, Bradfute, Steven, Brauburger, Kristina, Brister, J Rodney, Bukreyev, Alexander A, Cai, Yingyun, Chandran, Kartik, Davey, Robert A, Dolnik, Olga, Dye, John M, Enterlein, Sven, Gonzalez, JeanPaul, Formenty, Pierre, Freiberg, Alexander N, Hensley, Lisa E, Hoenen, Thomas, Honko, Anna N, Ignatyev, Georgy M, Jahrling, Peter B, Johnson, Karl M, Klenk, HansDieter, Kobinger, Gary, Lackemeyer, Matthew G, Leroy, Eric M, Lever, Mark S, Muehlberger, Elke, Netesov, Sergey V, Olinger, Gene G, Palacios, Gustavo, Patterson, Jean L, Paweska, Janusz T, Pitt, Louise, Radoshitzky, Sheli R, Ryabchikova, Elena I, Saphire, Erica Ollmann, Shestopalov, Aleksandr M, Smither, Sophie J, Sullivan, Nancy J, Swanepoel, Robert, Takada, Ayato, Towner, Jonathan S, van der Groen, Guido, Volchkov, Viktor E, Volchkova, Valentina A, WahlJensen, Victoria, Warren, Travis K, Warfield, Kelly L, Weidmann, Manfred, Nichol, Stuart T. Virus nomenclature below the species level: a standardized nomenclature for filovirus strains and variants rescued from cDNA. ARCHIVES OF VIROLOGY[J]. 2014, 159(5): 1229-1237, https://www.webofscience.com/wos/woscc/full-record/WOS:000335777600048.
[62] Du, Zhiyou, Chen, Aizhong, Chen, Wenhu, Liao, Qiansheng, Zhang, Hengmu, Bao, Yiming, Roossinck, Marilyn J, Carr, John P. Nuclear-Cytoplasmic Partitioning of Cucumber Mosaic Virus Protein 2b Determines the Balance between Its Roles as a Virulence Determinant and an RNA-Silencing Suppressor. JOURNAL OF VIROLOGY[J]. 2014, 88(10): 5228-5241, https://www.webofscience.com/wos/woscc/full-record/WOS:000335446400005.
[63] Brister, J Rodney, Bao, Yiming, Zhdanov, Sergey A, Ostapchuck, Yuri, Chetvernin, Vyacheslav, Kiryutin, Boris, Zaslavsky, Leonid, Kimelman, Michael, Tatusova, Tatiana A. Virus Variation Resource-recent updates and future directions. NUCLEIC ACIDS RESEARCH[J]. 2014, 42(D1): D660-D665, http://dx.doi.org/10.1093/nar/gkt1268.
[64] Jens H Kuhn, Kristian G Andersen, Sylvain Baize, Ymng Bo, Sina Bavari, Nicolas Berthet, Olga Blinkova, J Rodney Brister, Anna N Clawson, Joseph Fair, Martin Gabriel, Robert F Garry, Stephen K Gire, Augustine Goba, JeanPaul Gonzalez, Stephan Gnther, Christian T Happi, Peter B Jahrling, Jimmy Kapetshi, Gary Kobinger, Jeffrey R Kugelman, Eric M Leroy, Gael Darren Maganga, Placide K Mbala, Lina M Moses, JeanJacques MuyembeTamfum, Magassouba NFaly, Stuart T Nichol, Sunday A Omilabu, Gustavo Palacios, Daniel J Park, Janusz T Paweska, Sheli R Radoshitzky, Cynthia A Rossi, Pardis C Sabeti, John S Schieffelin, Randal J Schoepp, Rachel Sealfon, Robert Swanepoel, Jonathan S Towner, Jiro Wada, Nadia Wauquier, Nathan L Yozwiak, Pierre Formenty, Eric O Freed. Nomenclature- and Database-Compatible Names for the Two Ebola Virus Variants that Emerged in Guinea and the Democratic Republic of the Congo in 2014. Viruses[J]. 2014, 6(11): 4760-4799, https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4246247/.
发表著作
(1) Hemorrhagic Fever Viruses, Springer, 2017-09, 第 1 作者

科研活动

   
科研项目
( 1 ) 国际生命组学数据共享计划, 主持, 国家级, 2017-09--2020-07
( 2 ) 大数据驱动的生物信息领域创新示范平台, 主持, 部委级, 2018-01--2019-12

指导学生

已指导学生

郭同坤  硕士研究生  0710J3-生物信息学  

邢培琪  博士研究生  0710J3-生物信息学  

李萌伟  博士研究生  0710J3-生物信息学  

亢红恩  硕士研究生  0710J3-生物信息学  

杨飞  博士研究生  0710J3-生物信息学  

宫政  博士研究生  0710J3-生物信息学  

金彤  硕士研究生  0710J3-生物信息学  

现指导学生

李兆华  博士研究生  0710J3-生物信息学  

张陌尘  博士研究生  0710J3-生物信息学  

张韬  博士研究生  0710J3-生物信息学  

熊壮  博士研究生  0710J3-生物信息学  

赵薇  硕士研究生  0710J3-生物信息学  

王国梁  硕士研究生  0710Z1-基因组学  

宗文婷  博士研究生  0710J3-生物信息学  

郭栩彤  硕士研究生  0710J3-生物信息学  

张欣然  硕士研究生  0710J3-生物信息学  

吴松  博士研究生  0710J3-生物信息学