Hongyan WU received her Ph.D. from the University of Tokyo in 2011. She is now serving as an associate professor of engineering at the Research Center for Biomedical Information Technology Institute of Biomedical and Health Engineering, Shenzhen Institute of Advanced Technology,Chinese Academy Of Sciences. Her current research interests include Big Data Analytics & Health Informatics,deep learning, knowledge graph, etc..

Research Areas

 Big Data Analytics & Health Informatics,deep learning, knowledge graph, etc.. 


04/2008-03/2011   University of Tokyo    Phd
09/2003-07/2006   Chongqing University   Master
09/1999-07/2003   Chongqing University   Bachelor


Work Experience

01/2016-Now, Biomedical information technology research center,Biomedical information technology research center, Associate professor of engineering

04/2011-12/2015, Database Center of Life Sciences , Japan Institute of information systems, Senior  technologist



  1.  Chaojie Ji, Hongwei Chen,  ruxin Wang, Yunpeng Cai, Hongyan Wu*. Smoothness Sensor: Adaptive Smoothness-Transition Graph Convolutions for Attributed Graph Clustering, IEEE Transactions on Cybernetics, 2021

  2. Chaojie Ji, Yijia Zheng,  ruxin Wang, Yunpeng Cai,Hongyan Wu*. Graph Polish: A Novel Graph Generation Paradigm for Molecular Optimization, IEEE Transactions on Neural Networks and Learning Systems, 2021

  3. Ruxin Wang, Hongyan Wu, Yongsheng Wu, Ye Li. Improving Influenza Surveillance based on Multi-granularity Deep Spatiotemporal Neural Network, Computers in Biology and Medicine, 2021

  4.  Chaojie Ji, Hongyan Wu*. Cascade Architecture with Rhetoric Long Short-Term Memory for Complex Sentence Sentiment Analysis. Neurocomputing,2020,405:161-172.

  5.  Rongxiang Zhu, Chaojie Ji , Yingying Wang , Yunpeng Cai*,  Hongyan Wu*. Heterogeneous graph convolutional networks and matrix completion for miRNA-disease association prediction. Frontiers in Bioengineering and Biotechnology.2020.

  6. Chen L, Lu D, Hongyan Wu*, et al. OMDP: An ontology-based model for diagnosis and treatment of diabetes patients in remote healthcare systems[J]. International Journal of Distributed Sensor Networks, 2019, 15(5): 1550147719847112.

  7. Yingying Wang, Hongyan Wu*, Yunpeng Cai*. A Benchmark Study of Sequence Alignment Methods for Protein Clustering. BMC Bioinformatics .2018.

  8. Wang Y, Liu J, Wu H*, et al. Combined biomarkers composed of environment and genetic factors in stroke[J]. Bioscience trends, 2018.

  9. Zhong R, Wu Y*, Cai Y, et al. Forecasting hand, foot, and mouth disease in Shenzhen based on daily level clinical data and multiple environmental factors[J]. Bioscience trends, 2018, 12(5): 450-455.

  10. Wu, Hongyan; Cai, Yunpeng; Wu, Yongsheng; Zhong, Ren; Li, Qi; Zheng, Jing; Lin, Denan; Li, YeTime series analysis of weekly influenza-like illness rate using a one-year period of factors in random forest regression, Bioscience Trends, 2017, 11(3): 292-296.

  11. Hongyan Wu(#)(*), Atsuko Yamaguchi(*), Semantic Web technologies for the big data in life sciences, Bioscience Trends, 2014, 8(4): 192-201.

  12.  Hongyan Wu(#), Toyofumi Fujiwara, Yasunori Yamamoto, Jerven Bolleman, Atsuko Yamaguchi(*), BioBenchmark Toyama 2012: an evaluation of the performance of triple stores on biological data, Journal of Biomedical Sematics, 2014, 5.

  13.  Hongyan Wu(#), Taro L. Saito, Shinichi Morishita(*), Accelerating Path-free XML Quries in RDBMS, Informatiaon and Media Techonologies, 2011, (1): 52-63.

  14.  Hongyan Wu(#), Taro L. Saito, Shinichi Morishita(*), Accelerating Path-free XML Quries in RDBMS, IPSJ online Transactions, 2010, (206).

  15. Li Chen, Dongxin Lu, Sandeep Pirbhulal, Ali Hassan Sodhro, Zhenda Chen, Guixin Huang, Hongyan Wu */Development of Knowledge-based Ontology Framework for Diabetes Patients in Medical Applications.BIBE.2018.

  16. Hongyan Wu(#), Atsuko Yamaguchi, Jin-Dong Kim(*), Dynaminc join order optimization for SPARQL endpoint federation, 11th International Workshop on Scalable Semantic Web Knowledge Base Systems, SSWS 2015 colocated with 14th International Semantic Web Conference, ISWC 2015, 48-62, 2015.10.11-2015.10.15.



朱荣祥  硕士研究生  085211-计算机技术  

郑奕嘉  硕士研究生  085211-计算机技术  

左英男  硕士研究生  085211-计算机技术  

蒋志铭  硕士研究生  085211-计算机技术  

陈允文  硕士研究生  085211-计算机技术  

闻博  硕士研究生  085211-计算机技术  

高明慧  硕士研究生  085211-计算机技术  


陈宏威  硕士研究生  085211-计算机技术  

林越  硕士研究生  085400-电子信息  

黄华振  硕士研究生  085400-电子信息  

叶翔鹏  硕士研究生  085400-电子信息