081701-化学工程

分子模拟，高性能计算，乳液，蛋白质，复杂大分子体系，动态结构

2009-09--北京理工大学   学士
2003-09--2009-07   中国科学院过程工程研究所   博士

   

2012-08~现在, 中国科学院过程工程研究所, 副研究员
2009-07~现在, 中国科学院过程工程研究所, 助理研究员

   

（1） 首届中国科学院超级计算最佳应用奖, , 院级, 2013

   

[1] Sheng, Yanan, Li, Zhengjun, Lin, Xuan, Ma, Yanyan, Ren, Ying, Su, Zhiguo, Ma, Guanghui, Zhang, Songping. The position of Spy Tag/Catcher system in hepatitis B core protein particles affects the immunogenicity and stability of the synthetic vaccine. VACCINE[J]. 2023, 41(33): 4867-4878, http://dx.doi.org/10.1016/j.vaccine.2023.06.070.
[2] 陈新, 陈卫, 张现仁, 任瑛, 李粮生. 熔融氯化钠晶体介电常数的模拟计算方法. 北京化工大学学报:自然科学版[J]. 2023, 50(3): 59-68, [3] Zhengjun Li, Yanyan Ma, Ren, Ying, Xuan Lin, Su, Zhiguo, Songping Zhang. Thermal-triggered loading and GSH-responsive releasing property of HBc particles for drug delivery. Journal of Controlled Release[J]. 2023, 784-796, [4] Xin Chen, Wei Chen, Xianren Zhang, Daojian Cheng, Ying Ren. The study on the dielectric properties of structural changes of surfactant aqueous solution by molecular dynamics simulation. JOURNAL OF MOLECULAR LIQUIDS. 2023, 379: http://dx.doi.org/10.1016/j.molliq.2023.121622.
[5] Qingxia Xiong, Ying Ren, Yufei Xia, Guanghui Ma, Reiji Noda, Wei Ge. Molecular dynamics simulations of ovalbumin adsorption at squalene/water interface. CHINESE JOURNAL OF CHEMICAL ENGINEERING[J]. 2022, http://dx.doi.org/10.1016/j.cjche.2022.06.014.
[6] Chen, Jianhua, Ren, Ying, Huang, Wen Lai, Zhang, Lin, Li, Jinghai. Multilevel Mesoscale Complexities in Mesoregimes: Challenges in Chemical and Biochemical Engineering. ANNUAL REVIEW OF CHEMICAL AND BIOMOLECULAR ENGINEERINGnull. 2022, 13: 431-455, http://dx.doi.org/10.1146/annurev-chembioeng-092220-115031.
[7] Chen, Siyu, Chen, Wei, Ren, Ying, Sun, Jingyuan, Wang, Jingdai, Yang, Yongrong. Molecular Dynamics Simulation of the Nascent Polyethylene Crystallization in Confined Space: Nucleation and Lamella Orientation. MACROMOLECULES[J]. 2022, 55(17): 7368-7379, http://dx.doi.org/10.1021/acs.macromol.2c01098.
[8] Yang, XueDan, Chen, Wei, Ren, Ying, Chu, LiangYin. Exploration of the Adsorption Kinetics of Surfactants at the Water-Oil Interface via Grand-Canonical Molecular Dynamics Simulations. LANGMUIR[J]. 2022, 38(3): 1277-1286, http://dx.doi.org/10.1021/acs.langmuir.1c03205.
[9] Yang, XueDan, Chen, Wei, Ren, Ying, Chu, LiangYin. Exploring dielectric spectra of polymer through molecular dynamics simulations. MOLECULAR SIMULATION[J]. 2022, 48(10): 935-943, http://dx.doi.org/10.1080/08927022.2022.2083122.
[10] 王瑞, 任瑛, 陈卫, 韩永生. 冰水界面动态结构的分子动力学模拟研究. 化工学报[J]. 2022, 73(3): 1315-1323, http://lib.cqvip.com/Qikan/Article/Detail?id=7106736276.
[11] Lu, Fengying, Li, Zhengjun, Sheng, Yanan, Ma, Yanyan, Yang, Yanli, Ren, Ying, Su, Zhiguo, Yu, Rong, Zhang, Songping. Thermal-triggered packing of lipophilic NIR dye IR780 in hepatitis B core at critical ionic strength and cargo-host ratio for improved stability and enhanced cancer phototherapy. BIOMATERIALS[J]. 2021, 276: http://dx.doi.org/10.1016/j.biomaterials.2021.121035.
[12] 马艳艳, 李正军, 张松平, 陈卫, 任瑛. HBc-VLP的分子动力学模拟和结合自由能计算. 过程工程学报[J]. 2021, 21(2): 219-229, http://lib.cqvip.com/Qikan/Article/Detail?id=7104287977.
[13] Yang, XueDan, Chen, Wei, Ren, Ying, Chu, LiangYin. Exploring the structural transition mechanisms of a pair of poly(N-isopropylacrylamide) chains in aqueous solution through coarse-grained molecular simulations coupled with metadynamics. MOLECULAR SIMULATION[J]. 2021, 47(6): 480-489, http://dx.doi.org/10.1080/08927022.2021.1881086.
[14] Li, Chen, Chen, Wei, Lin, Xuan, Zhang, Songping, Wang, Yufei, He, Xianfeng, Ren, Ying. Molecular dynamics study on the stability of foot-and-mouth disease virus particle in salt solution. MOLECULAR SIMULATION[J]. 2021, 47(13): 1104-1111, http://dx.doi.org/10.1080/08927022.2021.1951262.
[15] Chen, Wei, Ren, Ying. Molecular dynamics simulations of polymerisation and crystallisation at constant chemical potential. MOLECULAR SIMULATION[J]. 2020, 46(11): 823-828, https://www.webofscience.com/wos/woscc/full-record/WOS:000544910200001.
[16] Durand, Alain, Esquena, Jordi, Yang, Ning, Ma, Guanghui, Ren, Ying, Jaeger, Frank Kleine, Sachweh, Bernd. Retrospect and prospect: 30 years of Formula conferences!. PARTICUOLOGY[J]. 2019, 44: 3-6, http://lib.cqvip.com/Qikan/Article/Detail?id=7002740110.
[17] Ying Ren, Qiang Zhang, Ning Yang, Ji Xu, Jialin Liu, Ruixin Yang, Christian Kunkelmann, Eduard Schreiner, Christian Holtze, Kerstin Miilheims, Bernd Sachweh. Molecular dynamics simulations of surfactant adsorption at oil/water interface under shear flow. 颗粒学报英文版[J]. 2019, 36-43, http://lib.cqvip.com/Qikan/Article/Detail?id=7002740114.
[18] 刘佳霖, 任瑛, 陈卫, 杨晖, 何秀娟, 李应成. 油水界面上阴/阳离子型复配表面活性剂体系的分子动力学模拟. 过程工程学报[J]. 2019, 19(3): 533-543, http://lib.cqvip.com/Qikan/Article/Detail?id=7002388055.
[19] Chen, Chao, Guan, Xiaoping, Ren, Ying, Yang, Ning, Li, Jinghai, Kunkelman, Christian, Schreiner, Eduard, Holtze, Christian, Mulheims, Kerstin, Sachweh, Bernd. Mesoscale modeling of emulsification in rotor-stator devices Part II: A model framework integrating emulsifier adsorption. CHEMICAL ENGINEERING SCIENCE[J]. 2019, 193: 156-170, http://dx.doi.org/10.1016/j.ces.2018.08.049.
[20] Ren, Ying, Zhang, Qiang, Yang, Ning, Xu, Ji, Liu, Jialin, Yang, Ruixin, Kunkelmann, Christian, Schreiner, Eduard, Holtze, Christian, Muelheims, Kerstin, Sachweh, Bernd. Molecular dynamics simulations of surfactant adsorption at oil/water interface under shear flow. PARTICUOLOGY[J]. 2019, 44: 36-43, http://lib.cqvip.com/Qikan/Article/Detail?id=7002740114.
[21] 陈卫, 任瑛. 流态化与物质相变的相似性. 化工学报[J]. 2019, 70(1): 1-9, http://lib.cqvip.com/Qikan/Article/Detail?id=7001148226.
[22] Chen, Chao, Guan, Xiaoping, Ren, Ying, Yang, Ning, Li, Jinghai, Kunkelmann, Christian, Schreiner, Eduard, Holtze, Christian, Muelheims, Kerstin, Sachweh, Bernd. Mesoscale modeling of emulsification in rotor-stator devices Part I: A population balance model based on EMMS concept. CHEMICAL ENGINEERING SCIENCE[J]. 2019, 193: 171-183, http://dx.doi.org/10.1016/j.ces.2018.08.048.
[23] 李辰, 陈卫, 任瑛, 李粮生, 王彧斐. Al2O3不同力场参数的介电性能的比较分析. 计算机与应用化学[J]. 2019, 36(6): 577-582, http://lib.cqvip.com/Qikan/Article/Detail?id=7101816898.
[24] Alain Durand, Jordi Esquena, Ning Yang, Guanghui Ma, Ying Ren, Frank Kleine Jager, Bernd Sachweh. Retrospect and prospect: 30 years of Formula conferences!. 颗粒学报:英文版. 2019, 3-6, http://lib.cqvip.com/Qikan/Article/Detail?id=7002740110.
[25] 任瑛, 徐骥. 蛋白质体系分子动力学模拟的前沿进展--从介科学角度重新审视. 过程工程学报[J]. 2018, 18(6): 1126-1138, http://ir.ipe.ac.cn/handle/122111/28722.
[26] Yuan, Chengqian, Li, Shukun, Zou, Qianli, Ren, Ying, Yan, Xuehai. Multiscale simulations for understanding the evolution and mechanism of hierarchical peptide self-assembly. PHYSICAL CHEMISTRY CHEMICAL PHYSICS[J]. 2017, 19(35): 23614-23631, https://www.webofscience.com/wos/woscc/full-record/WOS:000410585900006.
[27] Han, Mengzhi, Xu, Ji, Ren, Ying. Sampling conformational space of intrinsically disordered proteins in explicit solvent: Comparison between well-tempered ensemble approach and solute tempering method. JOURNAL OF MOLECULAR GRAPHICS & MODELLING[J]. 2017, 72: 136-147, http://dx.doi.org/10.1016/j.jmgm.2016.12.014.
[28] Han, Mengzhi, Xu, Ji, Ren, Ying. Compromise in competition between free energy and binding effect of intrinsically disordered protein p53 C-terminal domain. MOLECULAR SIMULATION[J]. 2017, 43(2): 110-120, http://dx.doi.org/10.1080/08927022.2016.1237023.
[29] Han, Mengzhi, Xu, Ji, Ren, Ying, Li, Jinghai. Simulations of flow induced structural transition of the beta-switch region of glycoprotein Ib alpha. BIOPHYSICAL CHEMISTRY[J]. 2016, 209(FEB): 9-20, http://www.irgrid.ac.cn/handle/1471x/1047790.
[30] 曹添亮, 韩孟之, 徐骥, 任瑛. 驱动蛋白结构与运动机制. 中国生物化学与分子生物学报[J]. 2016, 32(7): "734-744", http://www.irgrid.ac.cn/handle/1471x/1188211.
[31] Han, Mengzhi, Xu, Ji, Ren, Ying, Li, Jinghai. Simulation of coupled folding and binding of an intrinsically disordered protein in explicit solvent with metadynamics. JOURNAL OF MOLECULAR GRAPHICS & MODELLING[J]. 2016, 68: 114-127, http://dx.doi.org/10.1016/j.jmgm.2016.06.015.
[32] Xu, Ji, Han, Mengzhi, Ren, Ying, Li, Jinghai. The principle of compromise in competition: exploring stability condition of protein folding. SCIENCE BULLETIN[J]. 2015, 60(1): 76-85, https://www.sciengine.com/doi/10.1007/s11434-014-0718-3.
[33] Xu, Ji, Ren, Ying, Li, Jinghai. Multiscale simulations of protein folding: application to formation of secondary structures. JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS[J]. 2013, 31(7): 779-787, http://ir.ipe.ac.cn/handle/122111/13324.
[34] Ren, Ying, Gao, Jian, Xu, Ji, Ge, Wei, Li, Jinghai. Key factors in chaperonin-assisted protein folding. PARTICUOLOGY[J]. 2012, 10(1): 105-116, http://sciencechina.cn/gw.jsp?action=detail.jsp&internal_id=4480256&detailType=1.
[35] Ge, Wei, Wang, Wei, Yang, Ning, Li, Jinghai, Kwauk, Mooson, Chen, Feiguo, Chen, Jianhua, Fang, Xiaojian, Guo, Li, He, Xianfeng, Liu, Xinhua, Liu, Yaning, Lu, Bona, Wang, Jian, Wang, Junwu, Wang, Limin, Wang, Xiaowei, Xiong, Qingang, Xu, Ming, Deng, Lijuan, Han, Yongsheng, Hou, Chaofeng, Hua, Leina, Huang, Wenlai, Li, Bo, Li, Chengxiang, Li, Fei, Ren, Ying, Xu, Ji, Zhang, Nan, Zhang, Yun, Zhou, Guofeng, Zhou, Guangzheng. Meso-scale oriented simulation towards virtual process engineering (VPE)-The EMMS Paradigm. CHEMICAL ENGINEERING SCIENCE[J]. 2011, 66(19): 4426-4458, http://dx.doi.org/10.1016/j.ces.2011.05.029.
[36] Xu Ji, Wang XiaoWei, He XianFeng, Ren Ying, Ge Wei, Li JingHai. Application of the Mole-8.5 supercomputer: Probing the whole influenza virion at the atomic level. CHINESE SCIENCE BULLETIN[J]. 2011, 56(20): 2114-2118, http://lib.cqvip.com/Qikan/Article/Detail?id=38458919.
[37] 徐骥, 葛蔚, 任瑛, 李静海. Particle-Mesh Ewald（PME）算法的GPU加速. 计算物理[J]. 2010, 27(4): 548-554, http://lib.cqvip.com/Qikan/Article/Detail?id=34673233.
[38] 葛蔚, 刘新华, 任瑛, 徐骥, 李静海. 从多尺度到介尺度——复杂化工过程模拟的新挑战. 化工学报[J]. 2010, 1613-1620, http://lib.cqvip.com/Qikan/Article/Detail?id=34375712.
[39] Xu, Ji, Ren, Ying, Ge, Wei, Yu, Xiang, Yang, Xiaozhen, Li, Jinghai. Molecular dynamics simulation of macromolecules using graphics processing unit. MOLECULAR SIMULATION[J]. 2010, 36(14): 1131-1140, http://www.irgrid.ac.cn/handle/1471x/778680.
[40] Gao Jian, Ren Ying, Ge Wei. Molecular Dynamics Simulation of Effect of Salt on the Compromise of Hydrophilic and Hydrophobic Interactions in Sodium Dodecyl Sulfate Micelle Solutions. CHINESE JOURNAL OF CHEMICAL ENGINEERING[J]. 2009, 17(4): 654-660, http://sciencechina.cn/gw.jsp?action=detail.jsp&internal_id=3657390&detailType=1.
[41] Ren, Ying, Gao, Jian, Ge, Wei, Li, Jinghai. Thermal Unfolding of a Double-Domain Protein: Molecular Dynamics Simulation of Rhodanese. INDUSTRIAL & ENGINEERING CHEMISTRY RESEARCH[J]. 2009, 48(19): 8865-8871, http://www.irgrid.ac.cn/handle/1471x/778705.
[42] Ren, Ying, Gao, Jian, Xu, Ji, Ge, Wei, Li, Jinghai. Explicit solvent molecular dynamics simulations of chaperonin-assisted rhodanese folding. PARTICUOLOGY[J]. 2009, 7(3): 220-224, http://lib.cqvip.com/Qikan/Article/Detail?id=30644812.
[43] Ge, Wei, Wang, Wei, Ren, Ying, Li, Jinghai. More opportunities than challenges - perspectives on chemical engineering. CURRENT SCIENCE[J]. 2008, 95(9): 1310-1316, http://www.irgrid.ac.cn/handle/1471x/725244.
[44] Ren Ying, Gao Jian, Ge Wei, Li JingHai, Hu GuoHua. Molecular dynamics simulation of a single polymer in hydrophilic nano-slits. CHINESE SCIENCE BULLETIN[J]. 2008, 53(17): 2599-2606, http://lib.cqvip.com/Qikan/Article/Detail?id=28007935.
[45] 唐德翔, 葛蔚, 易锋, 王小伟, 郭力, 任瑛. 粒子方法并行计算通用化的研究与应用. 化工学报[J]. 2006, 57(3): 553-557, http://lib.cqvip.com/Qikan/Article/Detail?id=21505701.

   

（ 1 ） 液滴聚并的吸附动力学模型开发, 主持, 研究所（学校）, 2014-08--2017-07
（ 2 ） 表活剂油水固体系微观结构和作用机理研究, 主持, 研究所（学校）, 2014-01--2016-12
（ 3 ） 蛋白质在流场中结构转变的非平衡分子动力学模拟研究, 主持, 国家级, 2012-01--2014-12
（ 4 ） 基于胶束结构特性的驱油用表面活性剂分子设计, 主持, 国家级, 2015-01--2017-12
（ 5 ） 复杂多相体系介尺度机制的基本问题与计算模式, 参与, 国家级, 2019-01--2021-12

（1）Mesoscale modeling of droplet size distribution in rotor-stator mixing devices   第九届国际剂型与配方会议   2017-10-16
（2）Dynamic structures of proteins in vivo: compromise in competition between different mechanisms   第三届“表界面介尺度理论与模拟”学术研讨会   2017-06-10
（3）structural change of protein molecules in vivo   第四届国际分子模拟大会   2016-10-25
（4）Multi-scale Simulations of the Structural Changes of Proteins   Ying Ren, Ji Xu.   2013-03-21
（5）Large-scale molecular simulations of bio-systems using gpus   Ying Ren, Ji Xu, Jinghai Li.   2011-12-14
（6）Application of GPU-based Molecular Dynamics Simulation in Biomolecular Systems.   Ying Ren, Ji Xu, Jinghai Li.   2009-09-01
（7）Molecular dynamics simulation of protein folding.   Ying Ren, Ji Xu, Wei Ge and Jinghai Li.   2008-09-01

已指导学生

曹添亮  硕士研究生  085216-化学工程  

现指导学生

马艳艳  硕士研究生  085216-化学工程