发表论文
(1) The computational approaches of lncRNA identification based on coding potential: status quo and challenges, Computational and Structural Biotechnology Journal, 2020, 通讯作者(2) Transcriptome analysis of Paris polyphylla var. yunnanensis illuminates the biosynthesis and accumulation of steroidal saponins in rhizomes and leaves, Phytochemistry, 2020, 通讯作者(3) Dynamic Expansion and Functional Evolutionary Profiles of Plant Conservative Gene Family SBP-Box in Twenty Two Flowering Plants and the Origin of miR156, Biomolecules, 2020, 通讯作者(4) CRISPRlnc: a manually curated database of validated sgRNAs for lncRNAs, Nucleic Acids Research, 2019, 通讯作者(5) Regulatory roles of long non-coding RNAs implicated in cancer hallmarks, International Journal of Cancer, 2019, 通讯作者(6) Coding or noncoding, the converging concepts of RNAs, Frontiers in Genetics, 2019, 通讯作者(7) Identification of Cancer-Related Long Non-Coding RNAs Using XGBoost With High Accuracy, Frontiers in Genetics, 2019, 通讯作者(8) Genome-wide identification, phylogeny, and expression analysis of the SBP-box gene family in Euphorbiaceae, BMC Genomics, 2019, 通讯作者(9) JCDB: a comprehensive knowledge base for Jatropha curcas, an emerging model for woody energy plants, BMC Genomics, 2019, 通讯作者(10) ZFLNC: a comprehensive and well-annotated database for zebrafish lncRNA, Database, 2018, 通讯作者(11) Genome-wide Identification, Characterization and Expression Profiling of the Legume BZR Transcription Factor Gene Family, Frontiers in Plant Science, 2018, 通讯作者(12) Comparative chloroplast genomes of Paris Sect. Marmorata: insights into repeat regions and evolution implications, BMC Genomics, 2018, 通讯作者(13) CRlncRNA: a manually curated database of cancer-related long non-coding RNAs with experimental proof of functions on clinicopathological and molecular features, BMC Medical Genomics, 2018, 通讯作者(14) CRlncRC: a novel machine learning method for cancer-related long noncoding RNA identification based on integrated features, BMC Medical Genomics, 2018, 通讯作者(15) Comprehensive analysis of coding-lncRNA gene co-expression network uncovers conserved functional lncRNAs in zebrafish, BMC Genomics, 2018, 通讯作者(16) Genome-Wide Screening and Characterization of the Dof Gene Family in Physic Nut (Jatropha curcas L.), International Journal of Molecular Sciences, 2018, 通讯作者(17) Comparison of the Prognostic Utility of the Diverse Molecular Data among lncRNA, DNA Methylation, microRNA, and mRNA across Five Human Cancers, PLoS One, 2015, 第 3 作者(18) Prioritization of Cancer-Related Genomic Variants by SNP Association Network, Cancer Informatics, 2015, 第 1 作者(19) Long Non-Coding Rnas and Complex Human Diseases, Int J Mol Sci, 2013, 通讯作者(20) CloudLCA: finding the lowest common ancestor in metagenome analysis using cloud computing, Protein Cell, 2012, 第 3 作者(21) Large-Scale Prediction of Long Non-Coding Rna Functions in a Coding-Non-Coding Gene Co-Expression Network, Nucleic Acids Res, 2011, 第 2 作者(22) Ncfans: A Web Server for Functional Annotation of Long Non-Coding Rnas, Nucleic Acids Res, 2011, 通讯作者(23) Exploring Hierarchical and Overlapping Modular Structure in the Yeast Protein Interaction Network, BMC Genomics, 2010, 第 1 作者(24) Clustered Micrornas Coordination in Regulating Protein Protein Interaction Network, BMC Syst Biol, 2009, 第 2 作者(25) Noncode V2.0: Decoding the Non-Coding, Nucleic Acids Res, 2008, 第 2 作者(26) Microrna Regulation of Messenger-Like Noncoding Rnas, Trends Genet, 2008, 第 3 作者(27) Microrna-Encoding Long Non-Coding Rnas, BMC Genomics, 2008, 第 3 作者(28) Dynamic Changes in Subgraph Preference Profiles of Crucial Transcription Factors, PLoS Comput Biol, 2006, 第 2 作者(29) Noncode: An Integrated Knowledge Database of Non-Coding Rnas, Nucleic Acids Res, 2005, 第 1 作者