西南特色资源植物演化与创新利用

   

071001-植物学

植物多样性形成、演化与生物地理学

2006-09--2010-01   中国科学院昆明植物研究所   博士
2003-09--2006-07   沈阳农业大学   硕士
1999-09--2003-07   沈阳农业大学   学士

   

2023-07~现在, 中国科学院昆明植物研究所, 研究员
2020-10~2023-07,云南中医药大学, 研究员
2019-01~2020-10,云南中医药大学, 副研究员
2013-05~2018-12,中国科学院昆明植物研究所, 副研究员
2010-05~2013-04,复旦大学, 博士后

   

（1） Assembly and comparative analysis of the complete mitochondrial genome of two species of Argentina (Rosaceae), BMC GENOMICS, 2026, 第 3 作者  通讯作者
（2） High quality chromosome-level genome assembly of Psammosilene tunicoides (Caryophyllaceae), an endangered medicinal plant, Scientific Data, 2026, 第 4 作者  通讯作者
（3） Multi-omics analysis of peach-like aroma formation in fruits of wild strawberry (Fragaria nilgerrensis), HORTICULTURAL PLANT JOURNAL, 2026, 第 7 作者  通讯作者
（4） 青藏高原金露梅的基因组分析为遗传分化和花色变异提供了线索, Genomic analysis of Dasiphora on the Qinghai-Tibet Plateau provides insights into genetic divergence and flower color variation, The Plant Journal, 2025, 第 10 作者  通讯作者
（5） 草果活性成分生物合成途径的转录组学和代谢组学研究, Transcriptomic and metabolomic study of the biosynthetic pathways of bioactive components in Amomum tsaoko fruits, BMC Plant Biology, 2025, 第 6 作者  通讯作者
（6） Genome-wide survey of Crataegus scabrifolia provides new insights into its genetic evolution and adaptation mechanisms, GENETIC RESOURCES AND CROP EVOLUTION, 2025, 第 7 作者  通讯作者
（7） 藏药独一味染色体水平的基因组组装, Chromosome-level Genome assembly of the tibetan Medicinal Plant Duyiwei (Phlomoides rotata), Scientific Data, 2025, 第 5 作者  通讯作者
（8） 多组学分析揭示了中国树莓（Rubus spp.）的进化和果实发育, Multi‐omics analyses shed lights on the evolution and fruit development of Chinese raspberries (Rubus spp.), Journal of Integrative Plant Biology, 2025, 第 1 作者  通讯作者
（9） 基因组分析有助于深入了解草果品质性状的遗传基础。, Genomic analyses provide insights into the genetic basis of quality traits in Amomum tsaoko, Plant Diversity, 2025, 第 5 作者  通讯作者
（10） Two gap-free genomes of Argentina provide insights into their genetic relationships, Molecular Horticulture, 2025, 第 6 作者  通讯作者
（11） Transcriptomic and Physiological Analyses for the Role of Hormones and Sugar in Axillary Bud Development of Wild Strawberry Stolon, PLANTS-BASEL, 2024, 第 10 作者  通讯作者
（12） Genomic analyses provide insights into sex differentiation of tetraploid strawberry (Fragaria moupinensis), Plant Biotechnology Journal, 2024, 第 9 作者  通讯作者
（13） Integrative analysis of the metabolome and transcriptome reveals the potential mechanism of fruit flavor formation in wild hawthorn (Crataegus chungtienensis), PLANT DIVERSITY, 2023, 第 8 作者  通讯作者
（14） 栽培山楂（Crataegus pinnatifida var.major）基因组揭示苹果族的进化, Cultivated hawthorn (Crataegus pinnatifida var. major) genome sheds light on the evolution of Maleae (apple tribe), Journal of Integrative Plant Biology, 2022, 第 1 作者  通讯作者
（15） Integrated transcriptome and methylome analyses reveal the molecular regulation of drought stress in wild strawberry (Fragaria nilgerrensis), BMC PLANT BIOLOGY, 2022, 第 7 作者  通讯作者
（16） Comparative Genomic and Phylogenetic Analysis of Chloroplast Genomes of Hawthorn (Crataegus spp.) in Southwest China, FRONTIERS IN GENETICS, 2022, 第 6 作者  通讯作者
（17） Dynamic Changes of DNA Methylation During Wild Strawberry ( Fragaria nilgerrensis ) Tissue Culture, FRONTIERS IN PLANT SCIENCE, 2021, 第 8 作者  通讯作者
（18） Genomic analysis of field pennycress (Thlaspi arvense) provides insights into mechanisms of adaptation to high elevation, BMC BIOLOGY, 2021, 第 10 作者  通讯作者
（19） Evolutionary history and pan-genome dynamics of strawberry (Fragaria spp.), PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2021, 第 14 作者  通讯作者
（20） Evaluation of genetic diversity and population structure of Fragaria nilgerrensis using EST-SSR markers, GENE, 2021, 第 8 作者  通讯作者
（21） The complete chloroplast genome and phylogenetic analysis of Saussurea wettsteiniana (Compositae), MITOCHONDRIAL DNA PART B-RESOURCES, 2021, 第 3 作者  通讯作者
（22） Reply to: Revisiting the origin of octoploid strawberry, NATURE GENETICS, 2020, 第 6 作者  通讯作者
（23） Phylogeography of Excoecaria acerifolia (Euphorbiaceae) suggests combined effects of historical drainage reorganization events and climatic changes on riparian plants in the Sino-Himalayan region, BOTANICAL JOURNAL OF THE LINNEAN SOCIETY, 2020, 第 2 作者
（24） Spatial genetic and epigenetic structure of Thlaspi arvense (field pennycress) in China, GENES & GENETIC SYSTEMS, 2020, 第 5 作者  通讯作者
（25） Increased epigenetic diversity and transient epigenetic memory in response to salinity stress inThlaspi arvense, ECOLOGY AND EVOLUTION, 2020, 第 8 作者  通讯作者
（26） Genome of Crucihimalaya himalaica , a close relative of Arabidopsis , shows ecological adaptation to high altitude, Proceedings of the National Academy of Sciences of the United States of America, 2019, 第 1 作者
（27） Investigation and taxonomy of wild Fragaria resources in Tibet, China, GENETIC RESOURCES AND CROP EVOLUTION, 2018, 第 4 作者
（28） Transcriptome sequencing of Crucihimalaya himalaica (Brassicaceae) reveals how Arabidopsis close relative adapt to the Qinghai-Tibet Plateau, Scientific Reports, 2016, 第 8 作者  通讯作者
（29） Comparative Transcriptomics of Strawberries (Fragaria spp.) Provides Insights into Evolutionary Patterns, Frontiers in Plant Science, 2016, 第 8 作者  通讯作者
（30） The genome and transcriptome of trichormus sp. nmc-1: insights into adaptation to extreme environments on the qinghai-tibet plateau., SCIENTIFIC REPORTS, 2016, 第 13 作者  通讯作者
（31） Phylogeography of Thlaspi arvense (Brassicaceae) in China Inferred from Chloroplast and Nuclear DNA Sequences and Ecological Niche Modeling, INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2015, 第 3 作者  通讯作者
（32） Proteasome-Mediated Degradation of FRIGIDA Modulates Flowering Time in Arabidopsis during Vernalization, PLANT CELL, 2014, 第 9 作者
（33） Genome-wide and molecular evolution analysis of the subtilase gene family in Vitis vinifera, BMC GENOMICS, 2014, 第 3 作者
（34） 水平基因转移在生物进化中的作用, 科学通报, 2014, 第 3 作者
（35） Complete Chloroplast Genome Sequence of Holoparasite Cistanche deserticola (Orobanchaceae) Reveals Gene Loss and Horizontal Gene Transfer from Its Host Haloxylon ammodendron (Chenopodiaceae), PLOS ONE, 2013, 第 2 作者
（36） Detecting adaptive evolution and functional divergence in aminocyclopropane-1-carboxylate synthase (ACS) gene family, COMPUTATIONAL BIOLOGY AND CHEMISTRY, 2012, 第 1 作者
（37） Chloroplast phylogeography of Terminalia franchetii (Combretaceae) from the eastern Sino-Himalayan region and its correlation with historical river capture events, MOLECULAR PHYLOGENETICS AND EVOLUTION, 2011, 第 1 作者
（38） Phylogeographic structure of Terminalia franchetii (Combretaceae) in southwest China and its implications for drainage geological history, JOURNAL OF PLANT RESEARCH, 2011, 第 1 作者

（1） 《延续生命——生物多样性与人类健康》，科学出版社, 科学出版社, 2017-03, 第 3 作者

现指导学生

杨泽敏  博士研究生  071001-植物学  

付予彤  博士研究生  071001-植物学