西南特色资源植物演化与创新利用

   

071001-植物学

植物多样性形成、演化与生物地理学

2023-07--中国科学院昆明植物研究所   研究员
2020-10--2023-07   云南中医药大学   研究员
2019-01--2020-10   云南中医药大学   副研究员
2013-05--2018-12   中国科学院昆明植物研究所   副研究员
2010-05--2013-04   复旦大学   博士后
2006-09--2010-01   中国科学院昆明植物研究所   博士
2003-09--2006-07   沈阳农业大学   硕士
1999-09--2003-07   沈阳农业大学   学士

   

（1） Assembly and comparative analysis of the complete mitochondrial genome of two species of Argentina (Rosaceae), BMC GENOMICS, 2026, 第 3 作者  通讯作者
（2） High quality chromosome-level genome assembly of Psammosilene tunicoides (Caryophyllaceae), an endangered medicinal plant, Scientific Data, 2026, 第 4 作者  通讯作者
（3） Multi-omics analysis of peach-like aroma formation in fruits of wild strawberry (Fragaria nilgerrensis), HORTICULTURAL PLANT JOURNAL, 2026, 第 7 作者  通讯作者
（4） Genomic analysis of Dasiphora on the Qinghai-Tibet Plateau provides insights into genetic divergence and flower color variation, The Plant Journal, 2025, 第 10 作者  通讯作者
（5） Transcriptomic and metabolomic study of the biosynthetic pathways of bioactive components in Amomum tsaoko fruits, BMC PLANT BIOLOGY, 2025, 第 6 作者  通讯作者
（6） Genome-wide survey of Crataegus scabrifolia provides new insights into its genetic evolution and adaptation mechanisms, GENETIC RESOURCES AND CROP EVOLUTION, 2025, 第 7 作者  通讯作者
（7） Chromosome-level Genome Assembly of the Tibetan Medicinal Plant Duyiwei ( Phlomoides rotata ), SCIENTIFIC DATA, 2025, 第 5 作者  通讯作者
（8） Multi-omics analyses shed lights on the evolution and fruit development of Chinese raspberries (Rubus spp.), Journal of Integrative Plant Biology, 2025, 第 1 作者  通讯作者
（9） Genomic analyses provide insights into the genetic basis of quality traits in Amomum tsaoko, PLANT DIVERSITY, 2025, 第 5 作者  通讯作者
（10） Two gap-free genomes of Argentina provide insights into their genetic relationships, Molecular Horticulture, 2025, 第 6 作者  通讯作者
（11） Transcriptomic and Physiological Analyses for the Role of Hormones and Sugar in Axillary Bud Development of Wild Strawberry Stolon, PLANTS-BASEL, 2024, 第 10 作者  通讯作者
（12） Genomic analyses provide insights into sex differentiation of tetraploid strawberry (Fragaria moupinensis), Plant Biotechnology Journal, 2024, 第 9 作者  通讯作者
（13） Integrative analysis of the metabolome and transcriptome reveals the potential mechanism of fruit flavor formation in wild hawthorn (Crataegus chungtienensis), PLANT DIVERSITY, 2023, 第 8 作者  通讯作者
（14） Cultivated hawthorn (Crataegus pinnatifida var. major) genome sheds light on the evolution of Maleae (apple tribe), Cultivated hawthorn (Crataegus pinnatifida var. major) genome sheds light on the evolution of Maleae (apple tribe), Journal of Integrative Plant Biology, 2022, 第 1 作者  通讯作者
（15） Integrated transcriptome and methylome analyses reveal the molecular regulation of drought stress in wild strawberry (Fragaria nilgerrensis), BMC PLANT BIOLOGY, 2022, 第 7 作者  通讯作者
（16） Comparative Genomic and Phylogenetic Analysis of Chloroplast Genomes of Hawthorn (Crataegus spp.) in Southwest China, FRONTIERS IN GENETICS, 2022, 第 6 作者  通讯作者
（17） Dynamic Changes of DNA Methylation During Wild Strawberry ( Fragaria nilgerrensis ) Tissue Culture, FRONTIERS IN PLANT SCIENCE, 2021, 第 8 作者  通讯作者
（18） Genomic analysis of field pennycress (Thlaspi arvense) provides insights into mechanisms of adaptation to high elevation, BMC BIOLOGY, 2021, 第 10 作者  通讯作者
（19） Evolutionary history and pan-genome dynamics of strawberry (Fragaria spp.), PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2021, 第 14 作者  通讯作者
（20） Evaluation of genetic diversity and population structure of Fragaria nilgerrensis using EST-SSR markers, GENE, 2021, 第 8 作者  通讯作者
（21） The complete chloroplast genome and phylogenetic analysis of Saussurea wettsteiniana (Compositae), MITOCHONDRIAL DNA PART B-RESOURCES, 2021, 第 3 作者  通讯作者
（22） Reply to: Revisiting the origin of octoploid strawberry, NATURE GENETICS, 2020, 第 6 作者  通讯作者
（23） Phylogeography of Excoecaria acerifolia (Euphorbiaceae) suggests combined effects of historical drainage reorganization events and climatic changes on riparian plants in the Sino-Himalayan region, BOTANICAL JOURNAL OF THE LINNEAN SOCIETY, 2020, 第 2 作者
（24） Spatial genetic and epigenetic structure of Thlaspi arvense (field pennycress) in China, GENES & GENETIC SYSTEMS, 2020, 第 5 作者  通讯作者
（25） Increased epigenetic diversity and transient epigenetic memory in response to salinity stress inThlaspi arvense, ECOLOGY AND EVOLUTION, 2020, 第 8 作者  通讯作者
（26） Genome of Crucihimalaya himalaica , a close relative of Arabidopsis , shows ecological adaptation to high altitude, Proceedings of the National Academy of Sciences of the United States of America, 2019, 第 1 作者
（27） Investigation and taxonomy of wild Fragaria resources in Tibet, China, GENETIC RESOURCES AND CROP EVOLUTION, 2018, 第 4 作者
（28） Transcriptome sequencing of Crucihimalaya himalaica (Brassicaceae) reveals how Arabidopsis close relative adapt to the Qinghai-Tibet Plateau, Scientific Reports, 2016, 第 8 作者  通讯作者
（29） Comparative Transcriptomics of Strawberries (Fragaria spp.) Provides Insights into Evolutionary Patterns, Frontiers in Plant Science, 2016, 第 8 作者  通讯作者
（30） The genome and transcriptome of trichormus sp. nmc-1: insights into adaptation to extreme environments on the qinghai-tibet plateau., SCIENTIFIC REPORTS, 2016, 第 13 作者  通讯作者
（31） Phylogeography of Thlaspi arvense (Brassicaceae) in China Inferred from Chloroplast and Nuclear DNA Sequences and Ecological Niche Modeling, INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2015, 第 3 作者  通讯作者
（32） Proteasome-Mediated Degradation of FRIGIDA Modulates Flowering Time in Arabidopsis during Vernalization, PLANT CELL, 2014, 第 9 作者
（33） Genome-wide and molecular evolution analysis of the subtilase gene family in Vitis vinifera, BMC GENOMICS, 2014, 第 3 作者
（34） 水平基因转移在生物进化中的作用, Horizontal gene transfer provides new insights into biological evolution, 科学通报, 2014, 第 3 作者
（35） Complete Chloroplast Genome Sequence of Holoparasite Cistanche deserticola (Orobanchaceae) Reveals Gene Loss and Horizontal Gene Transfer from Its Host Haloxylon ammodendron (Chenopodiaceae), PLOS ONE, 2013, 第 2 作者
（36） Detecting adaptive evolution and functional divergence in aminocyclopropane-1-carboxylate synthase (ACS) gene family, COMPUTATIONAL BIOLOGY AND CHEMISTRY, 2012, 第 1 作者
（37） Chloroplast phylogeography of Terminalia franchetii (Combretaceae) from the eastern Sino-Himalayan region and its correlation with historical river capture events, MOLECULAR PHYLOGENETICS AND EVOLUTION, 2011, 第 1 作者
（38） Phylogeographic structure of Terminalia franchetii (Combretaceae) in southwest China and its implications for drainage geological history, JOURNAL OF PLANT RESEARCH, 2011, 第 1 作者

（1） 《延续生命——生物多样性与人类健康》，科学出版社, 科学出版社, 2017-03, 第 3 作者

   

（ 1 ） 三种野生悬钩子果实性状形成的多组学解析与关键基因挖掘, 负责人, 国家任务, 2026-01--2029-12
（ 2 ） 整合单细胞时空组学探讨草莓匍匐茎分枝发育调控网络, 负责人, 地方任务, 2025-03--2028-02
（ 3 ） 特有和特色物种遗传多样性评估与基因资源挖掘, 负责人, 国家任务, 2024-12--2027-11
（ 4 ） 整合多组学的西南特色山楂资源遗传多样性与果实品质研究, 负责人, 国家任务, 2023-01--2026-12
（ 5 ） 青藏高原须弥芥群体遗传分化与基因组适应性进化研究, 负责人, 国家任务, 2021-01--2024-12
（ 6 ） 云南省万人计划青年拔尖人才专项, 负责人, 地方任务, 2020-01--2024-12
（ 7 ） 基于群体基因组学研究菥蓂适应极端海拔差异的演化过程和遗传机制, 负责人, 国家任务, 2018-01--2021-12

现指导学生

杨泽敏  博士研究生  071001-植物学